Variant report

Variant	rs7832524
Chromosome Location	chr8:62373316-62373317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:62373302-62373437	MCF-7	breast:	n/a	n/a
2	CTCF	chr8:62373200-62373350	A549	lung:	n/a	n/a
3	CTCF	chr8:62373240-62373390	RPTEC	kidney:	n/a	n/a
4	CTCF	chr8:62373240-62373390	GM12873	blood:	n/a	n/a
5	CTCF	chr8:62373280-62373430	MCF-7	breast:	n/a	n/a
6	CTCF	chr8:62373260-62373410	HCT-116	colon:	n/a	n/a
7	CTCF	chr8:62373280-62373430	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:62248558..62249344-chr8:62372696..62373675,2	MCF-7	breast:

Variant related genes	Relation type
CLVS1	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10087306	1.00[CEU][hapmap]
rs10088453	1.00[CEU][hapmap]
rs10090149	1.00[CEU][hapmap]
rs10097248	0.85[JPT][hapmap]
rs10112262	1.00[CEU][hapmap]
rs11984936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11986526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11991141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11997276	0.87[ASN][1000 genomes]
rs13438822	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes]
rs1546110	1.00[JPT][hapmap]
rs16918879	0.85[JPT][hapmap]
rs16927318	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes]
rs16927427	0.85[JPT][hapmap]
rs1968989	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs28660637	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57835491	0.84[ASN][1000 genomes]
rs6471952	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6992756	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes]
rs6996147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6996200	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7005403	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7816683	0.85[JPT][hapmap]
rs7826834	1.00[CEU][hapmap]
rs7840780	1.00[CHB][hapmap]
rs7841058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7841542	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7842754	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1029046	chr8:62224341-62535277	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv521898	chr8:62364663-62419120	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62364400-62380800	Weak transcription	Brain Germinal Matrix	brain
2	chr8:62366800-62383200	Weak transcription	Brain Anterior Caudate	brain
3	chr8:62367400-62381600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:62370600-62386600	Weak transcription	Fetal Brain Male	brain
5	chr8:62372400-62373800	Enhancers	Adipose Nuclei	Adipose
6	chr8:62372600-62374200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:62372600-62375000	Weak transcription	Fetal Brain Female	brain
8	chr8:62373200-62373800	Enhancers	Ovary	ovary

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