Variant report

Variant	rs7832898
Chromosome Location	chr8:48722783-48722784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:48722614..48724418-chr8:48728468..48731244,3	K562	blood:
2	chr8:48722614..48724297-chr8:48728377..48729994,3	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10088698	0.92[JPT][hapmap];0.83[TSI][hapmap]
rs10091017	0.85[CHB][hapmap];0.94[CHD][hapmap];0.83[JPT][hapmap]
rs10092880	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10095193	0.81[EUR][1000 genomes]
rs10097508	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10097783	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10106778	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs10109158	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10481294	0.81[ASN][1000 genomes]
rs10958274	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs12334811	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs1487438	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.83[JPT][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs1551655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs1894311	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs28485144	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28795698	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28809491	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4521758	0.97[ASN][1000 genomes]
rs4618724	0.81[ASN][1000 genomes]
rs4873266	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4873728	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4873737	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4873770	1.00[CEU][hapmap];0.87[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs6993483	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6995756	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014544	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7016660	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017622	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72646383	0.80[AMR][1000 genomes]
rs72646396	0.90[EUR][1000 genomes]
rs72646401	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72647906	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs729228	1.00[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs7812323	0.81[EUR][1000 genomes]
rs7813617	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7818445	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7828380	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7830350	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7830633	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7830743	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7831196	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7838910	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839161	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7839407	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841661	1.00[CEU][hapmap];0.84[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs8178016	1.00[CEU][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs8178079	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8178095	0.80[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs8178158	0.83[EUR][1000 genomes]
rs8178169	0.80[EUR][1000 genomes]
rs8178238	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs8178255	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8178258	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9657054	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap]
rs9918758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803608	chr8:48506628-48874811	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1021389	chr8:48700970-48880931	Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv539599	chr8:48700970-48880931	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48684200-48733800	Strong transcription	HUES6 Cell Line	embryonic stem cell
2	chr8:48684200-48733800	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:48684200-48734200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:48684400-48755200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr8:48684400-48778800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:48684400-48861600	Strong transcription	Dnd41	blood
7	chr8:48684800-48728200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:48685000-48818800	Strong transcription	Fetal Thymus	thymus
9	chr8:48685200-48734000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:48685600-48733600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr8:48693800-48751000	Weak transcription	Right Atrium	heart
12	chr8:48700000-48758800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr8:48701400-48729400	Weak transcription	Small Intestine	intestine
14	chr8:48703000-48733600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:48703000-48761800	Weak transcription	Stomach Mucosa	stomach
16	chr8:48703200-48723800	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:48703600-48727800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:48704200-48737400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:48704600-48722800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr8:48704600-48726200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:48704800-48756000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:48705000-48722800	Strong transcription	Fetal Intestine Small	intestine
23	chr8:48705000-48722800	Strong transcription	Fetal Stomach	stomach
24	chr8:48705400-48723000	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:48705400-48724000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:48708800-48722800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr8:48709000-48722800	Strong transcription	HepG2	liver
28	chr8:48709000-48723000	Strong transcription	Primary B cells from cord blood	blood
29	chr8:48709000-48723200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr8:48709400-48722800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr8:48709400-48723000	Strong transcription	Hela-S3	cervix
32	chr8:48709400-48724600	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr8:48710600-48726800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:48711200-48727400	Weak transcription	Psoas Muscle	Psoas
35	chr8:48711200-48741400	Weak transcription	Fetal Heart	heart
36	chr8:48711400-48740200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:48712400-48728400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr8:48712400-48729800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr8:48712800-48728000	Weak transcription	Fetal Kidney	kidney
40	chr8:48713600-48724200	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr8:48715000-48728800	Weak transcription	Brain Substantia Nigra	brain
42	chr8:48715000-48729600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr8:48715000-48734600	Weak transcription	Fetal Brain Male	brain
44	chr8:48715800-48725000	Strong transcription	HSMM	muscle
45	chr8:48716000-48724200	Weak transcription	HUVEC	blood vessel
46	chr8:48716000-48727600	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:48716200-48728400	Weak transcription	NHLF	lung
48	chr8:48716200-48734200	Weak transcription	Brain Angular Gyrus	brain
49	chr8:48716400-48733800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr8:48716400-48734000	Weak transcription	Placenta Amnion	Placenta Amnion

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