Variant report

Variant	rs7833870
Chromosome Location	chr8:100791156-100791157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26518185..26518917-chr8:100791052..100791908,2	MCF-7	breast:
2	chr8:100790764..100793031-chr8:100793544..100795545,2	K562	blood:
3	chr8:100189672..100191957-chr8:100789803..100791931,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10504992	0.88[EUR][1000 genomes]
rs11984855	0.82[EUR][1000 genomes]
rs11987013	0.88[EUR][1000 genomes]
rs11987034	0.88[EUR][1000 genomes]
rs11989649	0.85[EUR][1000 genomes]
rs11992778	0.88[EUR][1000 genomes]
rs11994623	0.88[EUR][1000 genomes]
rs11996543	0.94[EUR][1000 genomes]
rs1349244	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349245	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449786	1.00[EUR][1000 genomes]
rs1449790	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1449791	0.94[EUR][1000 genomes]
rs16897439	0.88[EUR][1000 genomes]
rs16897488	0.88[EUR][1000 genomes]
rs16897504	0.85[EUR][1000 genomes]
rs16897573	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs16897656	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897662	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897666	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897685	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897701	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897702	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897708	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897726	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17331148	1.00[EUR][1000 genomes]
rs1979115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1979117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2084554	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2084555	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2100220	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2122341	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167101	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28372694	0.82[EUR][1000 genomes]
rs2871953	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28847009	0.88[EUR][1000 genomes]
rs4288349	0.88[EUR][1000 genomes]
rs4342557	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531021	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734434	0.88[EUR][1000 genomes]
rs4734435	1.00[EUR][1000 genomes]
rs4734436	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4734437	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734438	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734439	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735616	0.88[EUR][1000 genomes]
rs4735622	0.88[EUR][1000 genomes]
rs4735623	0.88[EUR][1000 genomes]
rs4735624	0.88[EUR][1000 genomes]
rs4735631	0.94[EUR][1000 genomes]
rs4735632	1.00[EUR][1000 genomes]
rs4735634	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735635	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735636	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4735637	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735638	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735639	0.90[ASN][1000 genomes]
rs4735642	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735644	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735645	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56912854	0.89[AMR][1000 genomes]
rs57753543	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61753724	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003135	0.97[EUR][1000 genomes]
rs73271394	0.94[EUR][1000 genomes]
rs73273207	0.97[EUR][1000 genomes]
rs7387462	0.88[EUR][1000 genomes]
rs7832916	0.88[EUR][1000 genomes]
rs7833256	0.88[EUR][1000 genomes]
rs7841162	0.82[EUR][1000 genomes]
rs921313	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv1830910	chr8:100791156-101114794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100734600-100796600	Weak transcription	Pancreas	Pancrea
2	chr8:100763600-100796600	Weak transcription	HSMMtube	muscle
3	chr8:100766200-100798000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr8:100766200-100815600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:100769000-100798200	Weak transcription	Psoas Muscle	Psoas
6	chr8:100772000-100798000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr8:100772400-100824400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:100775000-100822400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:100776600-100805800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:100777600-100807800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:100777600-100809600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr8:100777800-100807200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr8:100778000-100806400	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:100778400-100857800	Weak transcription	Spleen	Spleen
15	chr8:100778600-100796600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr8:100779800-100801800	Weak transcription	Fetal Brain Male	brain
17	chr8:100780000-100795600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:100780200-100796600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:100780400-100796600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr8:100780400-100799000	Weak transcription	Thymus	Thymus
21	chr8:100780400-100810200	Weak transcription	Aorta	Aorta
22	chr8:100780400-100810600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:100780400-100816400	Weak transcription	Lung	lung
24	chr8:100780600-100799800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:100780600-100801200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr8:100780600-100802800	Weak transcription	Dnd41	blood
27	chr8:100780600-100810200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:100783200-100793000	Weak transcription	Fetal Stomach	stomach
29	chr8:100783200-100795800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr8:100783200-100796800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr8:100783200-100798200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:100783200-100841000	Weak transcription	Right Ventricle	heart
33	chr8:100783200-100858200	Weak transcription	Gastric	stomach
34	chr8:100783400-100857200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr8:100783600-100795400	Weak transcription	Stomach Mucosa	stomach
36	chr8:100783600-100798800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr8:100784400-100801200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr8:100785200-100792400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr8:100785200-100807400	Weak transcription	K562	blood
40	chr8:100787200-100791600	Strong transcription	Primary T cells from cord blood	blood
41	chr8:100787200-100792000	Strong transcription	Primary B cells from cord blood	blood
42	chr8:100787400-100793000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr8:100787400-100798800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:100787600-100793400	Weak transcription	Colon Smooth Muscle	Colon
45	chr8:100787600-100796400	Weak transcription	Fetal Intestine Large	intestine
46	chr8:100787600-100798400	Weak transcription	Hela-S3	cervix
47	chr8:100787600-100799000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr8:100787600-100801600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr8:100787600-100812200	Weak transcription	Fetal Thymus	thymus
50	chr8:100787800-100792000	Weak transcription	NHLF	lung

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