Variant report
| Variant | rs7833923 |
|---|---|
| Chromosome Location | chr8:64071902-64071903 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11991808 | 1.00[EUR][1000 genomes] |
| rs11993344 | 1.00[EUR][1000 genomes] |
| rs4270960 | 1.00[EUR][1000 genomes] |
| rs57145420 | 1.00[EUR][1000 genomes] |
| rs57317205 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58136897 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58347983 | 1.00[EUR][1000 genomes] |
| rs58523545 | 1.00[EUR][1000 genomes] |
| rs60595425 | 1.00[EUR][1000 genomes] |
| rs61143666 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61144659 | 1.00[EUR][1000 genomes] |
| rs6472082 | 1.00[EUR][1000 genomes] |
| rs6981955 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6982424 | 1.00[EUR][1000 genomes] |
| rs7000002 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7014890 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73254921 | 1.00[EUR][1000 genomes] |
| rs73254933 | 1.00[EUR][1000 genomes] |
| rs73254954 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73256855 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73266757 | 1.00[EUR][1000 genomes] |
| rs73266758 | 1.00[EUR][1000 genomes] |
| rs73266781 | 1.00[EUR][1000 genomes] |
| rs73268678 | 1.00[EUR][1000 genomes] |
| rs73268679 | 1.00[EUR][1000 genomes] |
| rs73268681 | 1.00[EUR][1000 genomes] |
| rs73270521 | 1.00[EUR][1000 genomes] |
| rs73270530 | 1.00[EUR][1000 genomes] |
| rs73270590 | 1.00[EUR][1000 genomes] |
| rs73272416 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033527 | chr8:63673915-64073735 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv465701 | chr8:63951237-64080486 | Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv611448 | chr8:63951237-64080486 | Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv890965 | chr8:64006201-64104092 | Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:64071600-64072000 | Flanking Active TSS | Duodenum Mucosa | Duodenum |
| 2 | chr8:64071800-64072200 | Flanking Active TSS | Rectal Mucosa Donor 29 | rectum |
