Variant report

Variant	rs7835152
Chromosome Location	chr8:49623096-49623097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49607319..49609112-chr8:49621401..49624226,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10090819	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10092718	0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10097910	0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10101066	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10108023	0.83[EUR][1000 genomes]
rs10111821	0.89[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1074382	0.85[CHB][hapmap]
rs10808720	0.85[CHB][hapmap]
rs10957199	0.81[CHB][hapmap]
rs1126259	0.94[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];0.89[JPT][hapmap];0.82[MKK][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11785748	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12155607	0.85[CHB][hapmap];0.86[CHD][hapmap];0.87[ASN][1000 genomes]
rs12550270	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13251991	0.85[CHB][hapmap]
rs13276316	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1482261	1.00[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1482262	0.85[CHB][hapmap]
rs16938731	0.87[EUR][1000 genomes]
rs1871889	0.85[CHB][hapmap]
rs2384970	0.82[ASN][1000 genomes]
rs2891648	1.00[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35243529	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4873285	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4873288	0.87[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55923266	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6472038	0.85[EUR][1000 genomes]
rs6984858	0.81[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6990865	0.81[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7825339	0.83[EUR][1000 genomes]
rs900237	0.85[CHB][hapmap]
rs900238	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs9298058	0.94[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9332436	0.81[CHB][hapmap]
rs966703	0.94[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.82[MKK][hapmap];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7835152	EFCAB1	cis	brain	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49612800-49626400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:49618000-49626000	Weak transcription	Fetal Kidney	kidney
3	chr8:49618200-49628000	Weak transcription	Fetal Lung	lung
4	chr8:49619000-49626200	Weak transcription	Spleen	Spleen
5	chr8:49621600-49628600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:49622400-49625800	Weak transcription	Esophagus	oesophagus
7	chr8:49622400-49625800	Weak transcription	Placenta	Placenta
8	chr8:49622400-49628000	Weak transcription	Ovary	ovary
9	chr8:49622800-49623200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:49622800-49627400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:49622800-49627600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr8:49623000-49624000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:49623000-49624000	Enhancers	HMEC	breast
14	chr8:49623000-49626000	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links