Variant report

Variant	rs7835203
Chromosome Location	chr8:99626266-99626267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99615002..99616656-chr8:99624984..99626547,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253911	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10282835	1.00[ASN][1000 genomes]
rs10504986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11785588	1.00[ASN][1000 genomes]
rs12386830	1.00[ASN][1000 genomes]
rs16896995	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897028	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897069	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897111	1.00[ASN][1000 genomes]
rs16897112	1.00[ASN][1000 genomes]
rs16897115	1.00[ASN][1000 genomes]
rs16897117	1.00[ASN][1000 genomes]
rs28621642	1.00[ASN][1000 genomes]
rs34018826	1.00[ASN][1000 genomes]
rs34329419	0.86[EUR][1000 genomes]
rs4554439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615538	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55793219	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55807423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55878650	1.00[ASN][1000 genomes]
rs55921088	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55933347	1.00[ASN][1000 genomes]
rs55947965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55999827	1.00[ASN][1000 genomes]
rs56088337	1.00[ASN][1000 genomes]
rs56099380	1.00[ASN][1000 genomes]
rs56185259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56246659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56290864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56356780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67954509	1.00[ASN][1000 genomes]
rs6982282	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982285	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994994	1.00[ASN][1000 genomes]
rs7012298	1.00[ASN][1000 genomes]
rs7012465	1.00[ASN][1000 genomes]
rs72666612	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666616	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666618	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666619	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666623	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666624	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666625	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666629	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666633	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666690	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666699	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72668403	1.00[ASN][1000 genomes]
rs72668407	1.00[ASN][1000 genomes]
rs72668412	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72668417	1.00[ASN][1000 genomes]
rs72668419	1.00[ASN][1000 genomes]
rs72668423	1.00[ASN][1000 genomes]
rs72668425	1.00[ASN][1000 genomes]
rs72668426	1.00[ASN][1000 genomes]
rs72668428	1.00[ASN][1000 genomes]
rs72668430	1.00[ASN][1000 genomes]
rs73699303	1.00[ASN][1000 genomes]
rs7817630	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7839115	1.00[ASN][1000 genomes]
rs7842869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv891219	chr8:99526819-99643487	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99603000-99635600	Weak transcription	Lung	lung
2	chr8:99606800-99635800	Weak transcription	Aorta	Aorta
3	chr8:99606800-99637400	Weak transcription	Ovary	ovary
4	chr8:99611800-99639800	Weak transcription	Small Intestine	intestine
5	chr8:99614800-99635600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:99617000-99635600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:99618400-99626400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:99619400-99635600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:99621800-99651400	Weak transcription	Left Ventricle	heart
10	chr8:99621800-99663000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:99625000-99626600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:99625000-99626600	Enhancers	HepG2	liver
13	chr8:99625400-99626400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:99625400-99626400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr8:99625400-99633400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:99625400-99635800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:99625400-99643400	Weak transcription	NHEK	skin
18	chr8:99625600-99635400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:99625600-99638200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:99625600-99645000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:99625800-99626400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:99626200-99626400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr8:99626200-99626600	ZNF genes & repeats	Dnd41	blood

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