Variant report

Variant	rs7835336
Chromosome Location	chr8:49957895-49957896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:49955516..49959345-chr8:49967725..49970729,4	K562	blood:
2	chr8:49948031..49950332-chr8:49957405..49959978,2	K562	blood:
3	chr8:49955334..49957010-chr8:49957761..49960286,2	K562	blood:
4	chr8:49954242..49956834-chr8:49957466..49960286,2	K562	blood:
5	chr8:49957600..49959264-chr8:49982765..49984900,3	K562	blood:
6	chr8:49957733..49959287-chr8:50036754..50039574,2	K562	blood:
7	chr8:49957324..49959280-chr8:49961057..49962998,2	K562	blood:
8	chr8:49936864..49938883-chr8:49957396..49960240,2	K562	blood:
9	chr8:49957437..49960901-chr8:49963560..49965969,3	K562	blood:

No data

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10435575	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10504073	0.85[ASN][1000 genomes]
rs10957317	0.85[EUR][1000 genomes]
rs10957357	1.00[YRI][hapmap]
rs10957363	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11990854	0.80[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12545097	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12680366	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13268440	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13270448	0.82[ASN][1000 genomes]
rs1511363	0.87[EUR][1000 genomes]
rs1567555	0.85[EUR][1000 genomes]
rs1828495	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1858312	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1876717	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2137013	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2385127	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2385229	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2385230	0.85[ASN][1000 genomes]
rs4873092	1.00[YRI][hapmap]
rs4873093	0.92[ASW][hapmap];0.92[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873094	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4873095	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4873099	0.85[ASN][1000 genomes]
rs4873100	0.85[ASN][1000 genomes]
rs4873303	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873306	0.81[AFR][1000 genomes]
rs4873308	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4873310	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6983929	0.81[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6984804	0.84[CHD][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7005693	0.81[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7011891	0.92[ASW][hapmap];0.81[CEU][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap];0.83[LWK][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7013425	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974781	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7835336	C8orf22	cis	Muscle Skeletal	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49955400-49958600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr8:49955600-49958000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr8:49957200-49958400	Weak transcription	Psoas Muscle	Psoas

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