Variant report

Variant	rs7836506
Chromosome Location	chr8:126127830-126127831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126126335..126143313-chr8:126439680..126445836,35	MCF-7	breast:
2	chr8:126125572..126128289-chr8:126130309..126132372,2	MCF-7	breast:
3	chr8:126122099..126124809-chr8:126126071..126128199,2	MCF-7	breast:
4	chr8:126126055..126128150-chr8:126447132..126449888,2	MCF-7	breast:
5	chr8:126116434..126120549-chr8:126124395..126129620,4	K562	blood:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10106942	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11995484	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12542820	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2384914	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4300023	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4330708	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871572	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4871574	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7017478	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7831515	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7836761	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297712	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030748	chr8:126012282-126137840	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv539743	chr8:126012282-126137840	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv465803	chr8:126068197-126132816	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
6	nsv612148	chr8:126068197-126132816	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
7	nsv917158	chr8:126101990-126255266	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
8	nsv1022954	chr8:126117811-126180331	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126105000-126131400	Weak transcription	Fetal Kidney	kidney
2	chr8:126105200-126156400	Weak transcription	Fetal Brain Male	brain
3	chr8:126105400-126131200	Weak transcription	Fetal Heart	heart
4	chr8:126117200-126131000	Weak transcription	Colonic Mucosa	Colon
5	chr8:126117200-126137800	Weak transcription	Esophagus	oesophagus
6	chr8:126117400-126131200	Weak transcription	Brain Germinal Matrix	brain
7	chr8:126117400-126131200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:126117400-126132800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:126117400-126132800	Weak transcription	Left Ventricle	heart
10	chr8:126117400-126137600	Weak transcription	Spleen	Spleen
11	chr8:126117400-126137800	Weak transcription	Aorta	Aorta
12	chr8:126117400-126137800	Weak transcription	Pancreas	Pancrea
13	chr8:126117400-126138400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:126117400-126140400	Weak transcription	Right Ventricle	heart
15	chr8:126117600-126130800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:126117600-126132800	Weak transcription	Ovary	ovary
17	chr8:126117600-126132800	Weak transcription	Psoas Muscle	Psoas
18	chr8:126117600-126157400	Weak transcription	Fetal Brain Female	brain
19	chr8:126117800-126137200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:126117800-126160400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr8:126118000-126131000	Weak transcription	Colon Smooth Muscle	Colon
22	chr8:126118000-126132800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:126118000-126137400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr8:126118000-126191800	Weak transcription	Thymus	Thymus
25	chr8:126118400-126131200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr8:126118400-126131200	Weak transcription	Adipose Nuclei	Adipose
27	chr8:126118400-126131200	Weak transcription	HSMMtube	muscle
28	chr8:126118400-126137400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:126118400-126153600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr8:126118600-126130600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr8:126119200-126132600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr8:126120200-126132800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr8:126120200-126136800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr8:126120400-126131200	Weak transcription	Fetal Intestine Small	intestine
35	chr8:126120400-126136800	Weak transcription	Placenta	Placenta
36	chr8:126120600-126130800	Weak transcription	Fetal Intestine Large	intestine
37	chr8:126120600-126131000	Weak transcription	Fetal Lung	lung
38	chr8:126120600-126131200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr8:126120600-126156400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:126120800-126136800	Weak transcription	Fetal Stomach	stomach
41	chr8:126120800-126137200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:126120800-126137400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr8:126121000-126131000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr8:126121000-126131200	Weak transcription	Fetal Muscle Leg	muscle
45	chr8:126121000-126142800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr8:126121200-126131000	Weak transcription	Liver	Liver
47	chr8:126121200-126131600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr8:126121400-126130800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr8:126121400-126132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr8:126121400-126136200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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