Variant report

Variant	rs7838580
Chromosome Location	chr8:62150505-62150506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10090442	0.82[ASN][1000 genomes]
rs13278769	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1367974	1.00[JPT][hapmap]
rs1817635	0.83[AMR][1000 genomes]
rs1968908	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2052993	1.00[JPT][hapmap]
rs2119228	0.82[ASN][1000 genomes]
rs2919303	0.82[JPT][hapmap]
rs2919305	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2919311	0.82[ASN][1000 genomes]
rs2919312	0.82[ASN][1000 genomes]
rs2919313	0.82[ASN][1000 genomes]
rs2919314	0.82[ASN][1000 genomes]
rs2919315	0.82[ASN][1000 genomes]
rs2931284	1.00[ASN][1000 genomes]
rs2931285	0.82[ASN][1000 genomes]
rs2931286	0.82[ASN][1000 genomes]
rs2931292	0.82[JPT][hapmap]
rs2931295	0.82[ASN][1000 genomes]
rs2931312	0.81[AMR][1000 genomes]
rs2931322	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2931323	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2931346	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2931351	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2931353	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2931354	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2931355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2931356	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978491	0.82[ASN][1000 genomes]
rs2978492	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2978498	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2978542	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2978543	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2978547	0.83[EUR][1000 genomes]
rs2978548	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978550	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978552	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978558	0.82[JPT][hapmap]
rs34574871	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4100940	0.82[ASN][1000 genomes]
rs6983455	1.00[JPT][hapmap]
rs7017483	1.00[JPT][hapmap]
rs7017626	1.00[JPT][hapmap]
rs7818621	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834568	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838220	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs964784	0.86[ASN][1000 genomes]
rs9650205	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3479328	chr8:62150256-62150565	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3479327	chr8:62150270-62150557	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62150000-62151000	Enhancers	Fetal Brain Male	brain
2	chr8:62150400-62151600	Enhancers	Fetal Brain Female	brain

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