Variant report

Variant	rs7838713
Chromosome Location	chr8:63492258-63492259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10092099	0.88[AFR][1000 genomes]
rs10092935	0.92[AFR][1000 genomes]
rs10093124	1.00[AMR][1000 genomes]
rs10093315	1.00[AMR][1000 genomes]
rs10100399	0.97[AFR][1000 genomes]
rs10104556	0.97[AFR][1000 genomes]
rs10106080	1.00[AMR][1000 genomes]
rs10107981	1.00[AMR][1000 genomes]
rs10108125	1.00[AMR][1000 genomes]
rs10108406	1.00[AMR][1000 genomes]
rs12334898	1.00[AMR][1000 genomes]
rs13438922	0.89[AFR][1000 genomes]
rs13439077	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439208	0.97[AFR][1000 genomes]
rs13439470	0.89[AFR][1000 genomes]
rs16929260	1.00[AMR][1000 genomes]
rs2101047	1.00[AMR][1000 genomes]
rs28451590	0.88[AFR][1000 genomes]
rs28590250	1.00[AMR][1000 genomes]
rs28645735	0.88[AFR][1000 genomes]
rs28713340	0.92[AFR][1000 genomes]
rs2928389	0.81[AFR][1000 genomes]
rs6998590	1.00[AMR][1000 genomes]
rs7000003	1.00[AMR][1000 genomes]
rs7004134	1.00[AMR][1000 genomes]
rs827700	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv890959	chr8:63449156-63515522	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63490600-63497000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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