Variant report

Variant	rs7839684
Chromosome Location	chr8:62439981-62439982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10093414	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10107557	0.92[CEU][hapmap]
rs10504327	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10504328	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504329	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13256758	0.86[JPT][hapmap]
rs13270887	0.85[JPT][hapmap]
rs16927347	0.92[CEU][hapmap]
rs16927446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16927448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16927460	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16927536	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16927566	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17200413	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17200553	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17200623	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17201182	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17201219	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17788825	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]
rs17788873	0.85[CEU][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap]
rs17789341	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes]
rs17790020	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17790471	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790639	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279573	0.88[JPT][hapmap]
rs2610520	1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2640232	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2640237	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs4487757	0.92[CEU][hapmap]
rs59333700	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61252075	0.85[ASN][1000 genomes]
rs7012122	1.00[MEX][hapmap]
rs73263176	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7830314	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1027742	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv539633	chr8:62206883-62613533	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1021377	chr8:62214279-62596721	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv539634	chr8:62214279-62596721	ZNF genes & repeats Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1029046	chr8:62224341-62535277	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62411000-62505800	Weak transcription	Brain Angular Gyrus	brain
2	chr8:62411200-62493800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:62412000-62455600	Strong transcription	A549	lung
4	chr8:62414200-62455400	Weak transcription	Fetal Lung	lung
5	chr8:62414600-62448800	Weak transcription	HUVEC	blood vessel
6	chr8:62414800-62503400	Weak transcription	Fetal Heart	heart
7	chr8:62416000-62441400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:62417000-62454000	Weak transcription	NHEK	skin
9	chr8:62421200-62456400	Weak transcription	Psoas Muscle	Psoas
10	chr8:62421400-62452600	Weak transcription	Brain Germinal Matrix	brain
11	chr8:62422600-62440200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:62422600-62455400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:62423200-62456200	Weak transcription	Stomach Mucosa	stomach
14	chr8:62425800-62452600	Weak transcription	Primary T cells from cord blood	blood
15	chr8:62427000-62468600	Weak transcription	Fetal Thymus	thymus
16	chr8:62428000-62458600	Weak transcription	Fetal Intestine Small	intestine
17	chr8:62428000-62463800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr8:62428600-62444800	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:62428600-62451600	Weak transcription	Fetal Muscle Leg	muscle
20	chr8:62429000-62452800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:62429600-62463000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr8:62430000-62464400	Weak transcription	Brain Anterior Caudate	brain
23	chr8:62430000-62467200	Weak transcription	Right Ventricle	heart
24	chr8:62430200-62440600	Weak transcription	HSMMtube	muscle
25	chr8:62430400-62440200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr8:62430400-62449000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr8:62430400-62449400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:62430400-62449600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:62430400-62487400	Weak transcription	Colonic Mucosa	Colon
30	chr8:62430600-62440000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:62430600-62442800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr8:62430600-62447400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:62430600-62454200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr8:62430600-62479600	Weak transcription	Brain Substantia Nigra	brain
35	chr8:62431000-62440200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:62431600-62452800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr8:62431600-62455600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr8:62431600-62455600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr8:62431600-62456000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr8:62431800-62447000	Weak transcription	Hela-S3	cervix
41	chr8:62432400-62455000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr8:62433600-62449600	Weak transcription	Lung	lung
43	chr8:62433800-62440200	Weak transcription	Esophagus	oesophagus
44	chr8:62433800-62443200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr8:62433800-62449600	Weak transcription	Fetal Stomach	stomach
46	chr8:62434200-62452800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr8:62434200-62463400	Weak transcription	Spleen	Spleen
48	chr8:62434400-62455600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr8:62434600-62440200	Weak transcription	Liver	Liver
50	chr8:62434600-62440200	Weak transcription	Pancreas	Pancrea

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