Variant report

Variant	rs7840499
Chromosome Location	chr8:110180737-110180738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16879246	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879257	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879265	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4279563	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6998812	0.83[YRI][hapmap]
rs7013591	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7814888	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819524	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7827882	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7839384	0.85[AFR][1000 genomes]
rs7841543	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110175400-110181400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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