Variant report

Variant	rs7841093
Chromosome Location	chr8:10683333-10683334
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:10444435..10445487-chr8:10682600..10683390,5	MCF-7	breast:
2	chr8:10448565..10449854-chr8:10682554..10683407,5	K562	blood:
3	chr8:10447282..10448390-chr8:10682147..10683493,10	MCF-7	breast:
4	chr8:10444886..10445502-chr8:10682512..10683360,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10088888	0.92[ASN][1000 genomes]
rs10109416	0.81[ASN][1000 genomes]
rs10109550	0.99[ASN][1000 genomes]
rs11250079	0.94[EUR][1000 genomes]
rs11776767	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11986013	0.93[ASN][1000 genomes]
rs11986015	0.93[ASN][1000 genomes]
rs12216784	1.00[JPT][hapmap]
rs13274017	0.81[AMR][1000 genomes]
rs1544980	0.92[ASN][1000 genomes]
rs1544981	0.92[ASN][1000 genomes]
rs17152576	0.81[ASN][1000 genomes]
rs2271357	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28710808	0.88[ASN][1000 genomes]
rs3808605	0.90[ASN][1000 genomes]
rs4076424	1.00[JPT][hapmap]
rs4386942	1.00[JPT][hapmap]
rs4841415	1.00[JPT][hapmap]
rs60011038	0.92[ASN][1000 genomes]
rs6984388	0.81[AMR][1000 genomes]
rs6985890	0.99[ASN][1000 genomes]
rs6989846	0.99[ASN][1000 genomes]
rs6990589	0.90[ASN][1000 genomes]
rs6994919	1.00[JPT][hapmap]
rs7005531	0.99[ASN][1000 genomes]
rs7010709	0.90[ASN][1000 genomes]
rs7824384	1.00[ASN][1000 genomes]
rs7829089	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7829201	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7833128	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7840785	0.96[ASN][1000 genomes]
rs7846449	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv519768	chr8:10600254-10691993	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
8	nsv519376	chr8:10611708-10691993	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv429860	chr8:10615990-10685890	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1019754	chr8:10617908-10700140	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
11	nsv539471	chr8:10617908-10700140	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
12	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
13	nsv508497	chr8:10680621-10750255	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10648200-10683400	Weak transcription	Brain Angular Gyrus	brain
2	chr8:10657400-10685800	Weak transcription	Psoas Muscle	Psoas
3	chr8:10663000-10696200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:10665800-10688200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:10666400-10695200	Strong transcription	Primary T cells from cord blood	blood
6	chr8:10666800-10692400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:10667600-10693200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:10668400-10696200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:10669200-10692800	Strong transcription	Primary B cells from cord blood	blood
10	chr8:10669400-10692200	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr8:10669600-10691800	Strong transcription	GM12878-XiMat	blood
12	chr8:10669600-10692800	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:10670200-10692000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr8:10670400-10692800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:10671400-10692000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:10673000-10686800	Strong transcription	Fetal Thymus	thymus
17	chr8:10673000-10692000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr8:10673200-10686600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:10673200-10692200	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr8:10673200-10692400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:10673400-10684600	Weak transcription	Small Intestine	intestine
22	chr8:10673800-10683400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:10673800-10684000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr8:10673800-10692000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:10674000-10690200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr8:10674400-10692000	Strong transcription	Stomach Smooth Muscle	stomach
27	chr8:10674400-10692800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr8:10674600-10692000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:10674600-10692000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:10674600-10692000	Strong transcription	Fetal Muscle Leg	muscle
31	chr8:10674600-10692200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr8:10674600-10692200	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr8:10674600-10693200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:10674800-10696200	Weak transcription	Stomach Mucosa	stomach
35	chr8:10675000-10693000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr8:10676200-10686400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:10676200-10696200	Weak transcription	Fetal Heart	heart
38	chr8:10676600-10684000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr8:10676600-10684200	Weak transcription	Esophagus	oesophagus
40	chr8:10676600-10685600	Weak transcription	Brain Germinal Matrix	brain
41	chr8:10676600-10685800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr8:10676800-10684800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:10676800-10685800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr8:10677200-10692400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr8:10677200-10692400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr8:10677200-10692400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:10678400-10686400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr8:10678400-10692000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr8:10678400-10692200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr8:10678400-10692800	Strong transcription	Fetal Muscle Trunk	muscle

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