Variant report

Variant	rs7842701
Chromosome Location	chr8:99669923-99669924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs16896989	1.00[AMR][1000 genomes]
rs16896990	1.00[AMR][1000 genomes]
rs4585723	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55878650	0.83[AFR][1000 genomes]
rs58076033	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58433985	1.00[AMR][1000 genomes]
rs58733089	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60588461	1.00[AMR][1000 genomes]
rs6982060	1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6991345	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6993159	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs73275840	1.00[AMR][1000 genomes]
rs73275849	1.00[AMR][1000 genomes]
rs73275851	1.00[AMR][1000 genomes]
rs73275859	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275862	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275872	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275874	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275881	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275887	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275890	1.00[AMR][1000 genomes]
rs73275899	1.00[AMR][1000 genomes]
rs73277804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277807	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277809	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277812	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277822	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277859	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277866	1.00[AMR][1000 genomes]
rs73277869	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277870	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277872	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277876	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277884	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277895	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73277897	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279716	1.00[AMR][1000 genomes]
rs73279717	1.00[AMR][1000 genomes]
rs73279718	1.00[AMR][1000 genomes]
rs73279721	1.00[AMR][1000 genomes]
rs73279722	1.00[AMR][1000 genomes]
rs73279723	1.00[AMR][1000 genomes]
rs7818030	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826107	1.00[AMR][1000 genomes]
rs7841627	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99636200-99682400	Weak transcription	Fetal Stomach	stomach
2	chr8:99638200-99671200	Weak transcription	GM12878-XiMat	blood
3	chr8:99652600-99680600	Weak transcription	NHEK	skin
4	chr8:99659400-99676000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:99660000-99670200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:99663400-99682800	Weak transcription	Placenta	Placenta
7	chr8:99668000-99683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:99668400-99670400	Weak transcription	NHDF-Ad	bronchial
9	chr8:99668800-99681800	Weak transcription	Ovary	ovary
10	chr8:99669400-99671000	Weak transcription	Primary hematopoietic stem cells	blood

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