Variant report

Variant	rs7842833
Chromosome Location	chr8:100631262-100631263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:100630901-100631288	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:100629647..100631528-chr8:100671490..100673021,2	K562	blood:

Variant related genes	Relation type
RN7SL350P	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16897681	1.00[ASN][1000 genomes]
rs55872262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997635	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672386	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72674604	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72674630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72674632	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72674659	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72674660	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72674682	1.00[ASN][1000 genomes]
rs72674688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845386	1.00[ASN][1000 genomes]
rs9693641	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524617	chr8:100032844-100717925	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1022914	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv539695	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv891226	chr8:100295634-100708595	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv891227	chr8:100295634-100743556	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
7	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
8	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1023922	chr8:100474230-100702005	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
12	nsv831408	chr8:100523523-100721507	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1033795	chr8:100557344-100666640	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100599400-100632400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:100622200-100655400	Weak transcription	Primary B cells from cord blood	blood
3	chr8:100624600-100645200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:100625000-100632400	Weak transcription	NHLF	lung
5	chr8:100630000-100631600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:100630200-100631600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:100630200-100633200	Enhancers	Osteobl	bone
8	chr8:100630600-100631400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:100630600-100631600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:100630600-100631600	Enhancers	Fetal Heart	heart
11	chr8:100630600-100633200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:100630600-100633600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:100630800-100631400	Flanking Active TSS	HUVEC	blood vessel
14	chr8:100630800-100631600	Enhancers	Primary T cells from cord blood	blood
15	chr8:100630800-100631600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:100630800-100632000	Enhancers	Fetal Intestine Small	intestine
17	chr8:100631000-100631400	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr8:100631000-100631600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:100631000-100631600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:100631000-100631600	Enhancers	Adipose Nuclei	Adipose
21	chr8:100631000-100631600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr8:100631000-100631600	Enhancers	Fetal Intestine Large	intestine
23	chr8:100631200-100631400	Enhancers	Primary hematopoietic stem cells	blood
24	chr8:100631200-100631600	Enhancers	Aorta	Aorta
25	chr8:100631200-100631600	Enhancers	Fetal Kidney	kidney
26	chr8:100631200-100631600	Enhancers	Fetal Muscle Leg	muscle
27	chr8:100631200-100631600	Enhancers	Left Ventricle	heart
28	chr8:100631200-100631600	Enhancers	Ovary	ovary
29	chr8:100631200-100631600	Enhancers	Right Atrium	heart
30	chr8:100631200-100631600	Enhancers	Right Ventricle	heart
31	chr8:100631200-100631600	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr8:100631200-100631600	Enhancers	Spleen	Spleen
33	chr8:100631200-100631800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr8:100631200-100632000	Enhancers	Placenta	Placenta
35	chr8:100631200-100632400	Weak transcription	NHDF-Ad	bronchial
36	chr8:100631200-100633000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:100631200-100633600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:100631200-100648000	Weak transcription	Fetal Lung	lung

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