Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11987053	1.00[AMR][1000 genomes]
rs11988057	1.00[AMR][1000 genomes]
rs11989446	1.00[AMR][1000 genomes]
rs11989489	1.00[AMR][1000 genomes]
rs11990190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990660	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11991072	1.00[AMR][1000 genomes]
rs11992534	1.00[AMR][1000 genomes]
rs11994806	1.00[AMR][1000 genomes]
rs11996810	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11998047	1.00[AMR][1000 genomes]
rs16939327	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939391	1.00[AMR][1000 genomes]
rs16939404	1.00[AMR][1000 genomes]
rs16939407	1.00[AMR][1000 genomes]
rs16939409	1.00[AMR][1000 genomes]
rs16939472	1.00[AMR][1000 genomes]
rs6980664	1.00[AMR][1000 genomes]
rs6986206	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6989872	0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6991176	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6997593	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7005086	1.00[AMR][1000 genomes]
rs7017854	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6181	chr8:49885342-49930514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49920600-49923000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:49922000-49923000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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