Variant report

Variant	rs7843333
Chromosome Location	chr8:130091200-130091201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6470689	0.85[AFR][1000 genomes]
rs7815465	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891442	chr8:130016499-130130604	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891444	chr8:130024642-130130604	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130082000-130091400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr8:130085600-130115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130088400-130091600	Enhancers	Fetal Thymus	thymus
4	chr8:130089200-130091200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:130089400-130091400	Enhancers	Fetal Lung	lung
6	chr8:130089400-130096400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:130089600-130091200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:130089600-130091400	Flanking Active TSS	Dnd41	blood
9	chr8:130089800-130094800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:130090400-130091200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr8:130090600-130091400	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr8:130090600-130091400	Enhancers	Thymus	Thymus
13	chr8:130090600-130099800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:130090800-130091600	Enhancers	Fetal Kidney	kidney
15	chr8:130090800-130091800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:130091000-130096200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:130091200-130091600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
18	chr8:130091200-130091800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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