Variant report

Variant	rs784386
Chromosome Location	chr1:211581520-211581521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs784378	0.82[AFR][1000 genomes]
rs784381	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762141	chr1:211538685-211603843	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
2	esv1824154	chr1:211565640-211614280	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211556800-211585800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:211556800-211589800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211557000-211581800	Weak transcription	Fetal Kidney	kidney
4	chr1:211567000-211581600	Weak transcription	Gastric	stomach
5	chr1:211573800-211589600	Weak transcription	Ovary	ovary
6	chr1:211574000-211585000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:211574000-211589600	Weak transcription	Liver	Liver
8	chr1:211575400-211582000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:211575400-211588800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:211580400-211581800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:211580400-211582400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:211580400-211589600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:211580600-211581800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr1:211580600-211581800	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr1:211580600-211582000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:211580600-211582000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:211580800-211581800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:211580800-211582000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:211580800-211583200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
20	chr1:211581000-211581800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:211581000-211581800	Enhancers	Primary T cells fromperipheralblood	blood
22	chr1:211581000-211581800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:211581200-211584000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
24	chr1:211581400-211608200	Weak transcription	Primary B cells from peripheral blood	blood

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