Variant report

Variant	rs7845271
Chromosome Location	chr8:99799101-99799102
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10447977	0.82[JPT][hapmap];0.83[MEX][hapmap]
rs10755896	0.82[MEX][hapmap]
rs10755897	0.83[MEX][hapmap];0.83[TSI][hapmap]
rs11774463	0.83[MEX][hapmap]
rs11778767	0.93[GIH][hapmap]
rs11780500	0.93[GIH][hapmap];0.81[TSI][hapmap]
rs11785245	0.81[AMR][1000 genomes]
rs12114834	0.93[GIH][hapmap];0.82[JPT][hapmap]
rs12547297	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs12549803	0.81[TSI][hapmap]
rs12550783	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs12679734	0.91[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs12680195	0.83[MEX][hapmap];0.83[TSI][hapmap]
rs13269932	0.89[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs13275915	0.89[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs1447245	0.91[JPT][hapmap]
rs1476181	1.00[JPT][hapmap]
rs2442012	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2442014	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2515214	0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2515216	0.92[GIH][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs2515219	0.81[EUR][1000 genomes]
rs2922066	0.91[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs2922076	0.91[JPT][hapmap]
rs2922078	0.89[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs2922082	0.89[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs34366206	0.82[JPT][hapmap]
rs35798019	0.93[GIH][hapmap];0.85[TSI][hapmap]
rs4131873	0.83[GIH][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs4255105	1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs4279561	0.87[MEX][hapmap];0.81[TSI][hapmap]
rs4292660	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4304299	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4413739	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4549741	0.83[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs4562286	0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes]
rs4734410	0.89[GIH][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs4734414	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4735568	0.81[TSI][hapmap]
rs4735570	0.81[TSI][hapmap]
rs4735574	0.89[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs58679407	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62532587	0.81[AMR][1000 genomes]
rs6988087	0.83[CEU][hapmap];0.96[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6992925	0.89[GIH][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs7818828	1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes]
rs7827435	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656842	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1025685	chr8:99706280-99826236	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv539691	chr8:99706280-99826236	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv981968	chr8:99794499-99809509	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99796200-99799200	ZNF genes & repeats	NHEK	skin
2	chr8:99796400-99799200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:99797200-99802600	Weak transcription	Gastric	stomach
4	chr8:99797600-99799800	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:99797600-99809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:99797600-99809200	Weak transcription	Pancreas	Pancrea
7	chr8:99797800-99800200	Weak transcription	Thymus	Thymus
8	chr8:99797800-99806000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:99797800-99809200	Weak transcription	Ovary	ovary
10	chr8:99798000-99800800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:99798000-99804400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:99798400-99808400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:99798600-99800400	Weak transcription	A549	lung
14	chr8:99799000-99799400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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