Variant report

Variant	rs7845397
Chromosome Location	chr8:11043400-11043401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11042678..11045323-chr8:11057984..11059952,2	MCF-7	breast:
2	chr8:11042275..11044106-chr8:11054861..11057806,2	MCF-7	breast:
3	chr8:11040791..11043774-chr8:11044879..11047578,2	K562	blood:

Variant related genes	Relation type
ENSG00000171044	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10089039	1.00[AMR][1000 genomes]
rs10097295	1.00[AMR][1000 genomes]
rs2409731	0.82[AFR][1000 genomes]
rs57068380	1.00[AMR][1000 genomes]
rs57844839	1.00[AMR][1000 genomes]
rs58292393	1.00[AMR][1000 genomes]
rs58478925	1.00[AMR][1000 genomes]
rs58518000	1.00[AMR][1000 genomes]
rs58589293	1.00[AMR][1000 genomes]
rs58861459	1.00[AMR][1000 genomes]
rs59368626	0.89[AFR][1000 genomes]
rs59547174	1.00[AMR][1000 genomes]
rs60670109	1.00[AMR][1000 genomes]
rs61110938	1.00[AMR][1000 genomes]
rs6601558	1.00[AMR][1000 genomes]
rs6601567	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11026800-11043600	Weak transcription	Pancreas	Pancrea
2	chr8:11026800-11043800	Weak transcription	Spleen	Spleen
3	chr8:11028000-11048200	Weak transcription	Primary B cells from cord blood	blood
4	chr8:11028200-11050200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:11028200-11052400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:11028200-11056600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:11028800-11054400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:11029600-11056800	Weak transcription	Fetal Intestine Small	intestine
9	chr8:11031400-11054200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr8:11032000-11053800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr8:11034600-11054400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:11034600-11057000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:11034600-11057000	Weak transcription	Esophagus	oesophagus
14	chr8:11035400-11054600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:11035600-11044600	Weak transcription	NHEK	skin
16	chr8:11035600-11054000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:11035800-11044600	Weak transcription	NH-A	brain
18	chr8:11035800-11044800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:11035800-11051600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:11035800-11056000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:11036000-11045000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:11038200-11044600	Weak transcription	HSMM	muscle
23	chr8:11038200-11045000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:11038400-11043800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:11038400-11044800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:11039400-11052200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr8:11040000-11045400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr8:11040600-11054200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr8:11040800-11043400	Weak transcription	GM12878-XiMat	blood
30	chr8:11040800-11050000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:11041000-11051600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:11041600-11054200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:11042200-11055000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr8:11042600-11044600	Weak transcription	Fetal Stomach	stomach
35	chr8:11042600-11046000	Enhancers	Fetal Brain Male	brain
36	chr8:11042800-11043800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:11042800-11043800	Weak transcription	Gastric	stomach
38	chr8:11042800-11044400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr8:11042800-11056600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr8:11043000-11046800	Enhancers	HSMMtube	muscle
41	chr8:11043400-11044400	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links