Variant report

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11140630	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11140716	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11140750	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12379253	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13283032	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13284442	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13295978	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871283	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34702508	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35822389	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022971	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027129	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7038189	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7469302	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs766002	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:72457600-72472000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:72465000-72473200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:72467600-72474600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:72468000-72472200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:72468000-72473200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:72468000-72474400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:72470400-72472800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:72470400-72473000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:72470600-72472800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:72471000-72481800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:72471400-72473200	Enhancers	NHDF-Ad	bronchial
13	chr9:72471600-72471800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:72471600-72472600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:72471600-72472600	Enhancers	NH-A	brain
16	chr9:72471600-72472800	Enhancers	NHEK	skin
17	chr9:72471600-72473400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:72471600-72473600	Enhancers	HMEC	breast
19	chr9:72471600-72474000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr9:72471600-72474000	Enhancers	HUVEC	blood vessel

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