Variant report

Variant	rs7852250
Chromosome Location	chr9:15849304-15849305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10429512	1.00[CEU][hapmap]
rs10962172	0.81[EUR][1000 genomes]
rs10962193	1.00[CHB][hapmap]
rs10962194	1.00[CHB][hapmap]
rs11999303	1.00[CHB][hapmap]
rs12000772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12005062	1.00[CHB][hapmap]
rs12682932	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12683523	0.86[CHB][hapmap];0.92[ASN][1000 genomes]
rs12683980	0.88[CHB][hapmap]
rs12684485	0.87[ASN][1000 genomes]
rs12684785	0.85[CHB][hapmap]
rs12684808	0.86[CHB][hapmap]
rs12685476	0.86[CHB][hapmap]
rs12686591	0.88[CHB][hapmap]
rs13296360	0.86[YRI][hapmap]
rs1341737	0.96[YRI][hapmap]
rs1361607	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1396705	0.86[CHB][hapmap]
rs1417976	1.00[CEU][hapmap]
rs1536685	0.86[CHB][hapmap]
rs1572977	0.87[EUR][1000 genomes]
rs1578557	0.95[ASN][1000 genomes]
rs1578558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs1582200	1.00[ASN][1000 genomes]
rs16933544	0.85[CHB][hapmap]
rs16933738	0.85[EUR][1000 genomes]
rs16933805	0.86[CHB][hapmap]
rs16933814	0.86[CHB][hapmap]
rs2066291	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2105320	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs2153724	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2153725	0.84[YRI][hapmap]
rs4146288	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4146289	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4741544	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs57592105	0.95[ASN][1000 genomes]
rs59779354	0.92[ASN][1000 genomes]
rs6474976	0.87[EUR][1000 genomes]
rs6474977	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7019205	0.80[YRI][hapmap]
rs7026090	1.00[CHB][hapmap]
rs7028328	0.97[ASN][1000 genomes]
rs7029375	1.00[CHB][hapmap]
rs7029410	1.00[CHB][hapmap]
rs7032595	0.85[CHB][hapmap]
rs7035048	0.86[CHB][hapmap]
rs7039881	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs7040071	1.00[CHB][hapmap]
rs7040580	1.00[CHB][hapmap]
rs7044984	0.86[CHB][hapmap]
rs7048479	0.88[CHB][hapmap]
rs73422714	0.95[ASN][1000 genomes]
rs73422737	0.92[ASN][1000 genomes]
rs7388793	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs7468716	1.00[CEU][hapmap]
rs770192	0.97[ASN][1000 genomes]
rs770194	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs770198	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs770199	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs770200	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs770201	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs770202	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs770204	0.84[ASN][1000 genomes]
rs770205	0.84[ASN][1000 genomes]
rs7856304	0.92[ASN][1000 genomes]
rs7856877	0.93[ASN][1000 genomes]
rs7860354	1.00[ASN][1000 genomes]
rs7865141	0.87[EUR][1000 genomes]
rs7866472	0.86[CHB][hapmap]
rs7866641	0.86[YRI][hapmap]
rs7866699	1.00[CHB][hapmap]
rs7867018	1.00[CHB][hapmap]
rs7867521	0.92[ASN][1000 genomes]
rs7869609	1.00[CHB][hapmap]
rs9298738	0.87[YRI][hapmap]
rs9406537	0.86[YRI][hapmap]
rs9406543	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9407661	0.87[YRI][hapmap]
rs9407664	1.00[ASN][1000 genomes]
rs9407665	0.97[ASN][1000 genomes]
rs9407668	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613666	chr9:15823667-15875162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv613667	chr9:15823667-15876507	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016226	chr9:15841107-15875321	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1015435	chr9:15841107-15880385	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1032081	chr9:15845902-15878115	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1027790	chr9:15845902-15878841	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15830200-15857200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15844800-15850400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:15845000-15858800	Weak transcription	Thymus	Thymus
4	chr9:15847200-15850000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:15847200-15857600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:15849000-15850000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15849000-15873800	Weak transcription	Fetal Lung	lung

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