Variant report

Variant	rs7854094
Chromosome Location	chr9:15758902-15758903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1039815	0.87[EUR][1000 genomes]
rs1039816	0.81[EUR][1000 genomes]
rs10732334	0.84[EUR][1000 genomes]
rs10810445	0.87[EUR][1000 genomes]
rs10810447	0.84[EUR][1000 genomes]
rs1396705	0.91[ASN][1000 genomes]
rs1417974	0.87[EUR][1000 genomes]
rs1417975	0.87[EUR][1000 genomes]
rs16933544	0.98[ASN][1000 genomes]
rs1891208	0.84[EUR][1000 genomes]
rs1935225	0.87[EUR][1000 genomes]
rs1964706	0.87[EUR][1000 genomes]
rs1970496	0.81[EUR][1000 genomes]
rs2136357	0.87[EUR][1000 genomes]
rs2185664	0.84[EUR][1000 genomes]
rs34816651	0.92[ASN][1000 genomes]
rs4146292	0.84[EUR][1000 genomes]
rs4741536	0.81[EUR][1000 genomes]
rs4741537	0.81[EUR][1000 genomes]
rs4741540	0.84[EUR][1000 genomes]
rs59761231	0.89[ASN][1000 genomes]
rs60572069	0.91[ASN][1000 genomes]
rs6474950	0.82[ASN][1000 genomes]
rs6474961	0.87[EUR][1000 genomes]
rs6474968	0.91[ASN][1000 genomes]
rs7022810	0.93[ASN][1000 genomes]
rs7025247	0.87[EUR][1000 genomes]
rs7032595	0.87[ASN][1000 genomes]
rs7035048	0.95[ASN][1000 genomes]
rs73416209	0.91[ASN][1000 genomes]
rs73416213	0.88[ASN][1000 genomes]
rs73416233	0.89[ASN][1000 genomes]
rs73416254	0.95[ASN][1000 genomes]
rs73416261	0.97[ASN][1000 genomes]
rs73416267	1.00[ASN][1000 genomes]
rs73416285	0.94[ASN][1000 genomes]
rs7847946	0.94[ASN][1000 genomes]
rs7865193	0.81[EUR][1000 genomes]
rs7865391	0.84[EUR][1000 genomes]
rs7866413	0.87[EUR][1000 genomes]
rs7869609	1.00[ASN][1000 genomes]
rs7870166	0.97[ASN][1000 genomes]
rs7870244	0.97[ASN][1000 genomes]
rs7874094	0.84[EUR][1000 genomes]
rs958870	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7854094	CCDC171	cis	Esophagus Mucosa	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15742600-15769600	Weak transcription	Psoas Muscle	Psoas
2	chr9:15747200-15759600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:15757800-15763200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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