Variant report

Variant	rs7854208
Chromosome Location	chr9:72445216-72445217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72443896..72446419-chr9:72448241..72450702,2	MCF-7	breast:
2	chr9:72433968..72436412-chr9:72443051..72445385,2	K562	blood:
3	chr9:72440634..72442865-chr9:72442939..72445478,2	K562	blood:
4	chr9:72436123..72439031-chr9:72442805..72445416,2	K562	blood:

Variant related genes	Relation type
ENSG00000204711	Chromatin interaction
ENSG00000225626	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10735558	1.00[AMR][1000 genomes]
rs1330335	1.00[AMR][1000 genomes]
rs1576510	1.00[AMR][1000 genomes]
rs1581958	1.00[AMR][1000 genomes]
rs2309516	1.00[AMR][1000 genomes]
rs4409461	1.00[AMR][1000 genomes]
rs4744573	1.00[AMR][1000 genomes]
rs4744925	1.00[AMR][1000 genomes]
rs4744929	1.00[AMR][1000 genomes]
rs56399720	1.00[AMR][1000 genomes]
rs58351557	1.00[AMR][1000 genomes]
rs6559653	1.00[AMR][1000 genomes]
rs7032708	1.00[AMR][1000 genomes]
rs7037121	1.00[AMR][1000 genomes]
rs7045100	1.00[AMR][1000 genomes]
rs7046605	1.00[AMR][1000 genomes]
rs7853119	1.00[AMR][1000 genomes]
rs7856525	1.00[AMR][1000 genomes]
rs7865174	1.00[AMR][1000 genomes]
rs7869217	1.00[AMR][1000 genomes]
rs888601	1.00[AMR][1000 genomes]
rs987417	1.00[AMR][1000 genomes]
rs987418	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72440000-72451400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72440600-72457600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:72441400-72446400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:72441600-72467200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:72441800-72446400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:72441800-72446400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:72442600-72446400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:72442600-72446400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:72442600-72446400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:72442800-72457600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:72444000-72445400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr9:72444000-72445800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr9:72444200-72445400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr9:72444200-72445800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr9:72444400-72445400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr9:72444600-72445400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr9:72444600-72445600	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr9:72444600-72445800	Enhancers	Primary T cells fromperipheralblood	blood
20	chr9:72444600-72448800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:72444800-72445800	Enhancers	Fetal Thymus	thymus
22	chr9:72444800-72448800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:72445000-72445400	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr9:72445000-72449400	Enhancers	Primary T cells from cord blood	blood
25	chr9:72445200-72446600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links