Variant report

Variant	rs7856525
Chromosome Location	chr9:72237767-72237768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72195299..72197073-chr9:72236850..72239797,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10120072	1.00[AMR][1000 genomes]
rs1023201	1.00[AMR][1000 genomes]
rs10735558	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10867701	1.00[AMR][1000 genomes]
rs1330335	1.00[AMR][1000 genomes]
rs1576510	0.82[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1581958	1.00[AMR][1000 genomes]
rs1999215	1.00[AMR][1000 genomes]
rs2026384	1.00[AMR][1000 genomes]
rs2309516	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2781534	1.00[AMR][1000 genomes]
rs4409461	1.00[AMR][1000 genomes]
rs4744573	1.00[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4744916	1.00[AMR][1000 genomes]
rs4744925	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs4744929	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs56399720	1.00[AMR][1000 genomes]
rs6559653	0.82[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7036621	1.00[AMR][1000 genomes]
rs7045100	1.00[AMR][1000 genomes]
rs7853119	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7854208	1.00[AMR][1000 genomes]
rs7865174	1.00[AMR][1000 genomes]
rs7866895	1.00[AMR][1000 genomes]
rs7869217	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs888601	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs918338	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9410822	1.00[AMR][1000 genomes]
rs9410853	1.00[AMR][1000 genomes]
rs987417	1.00[AMR][1000 genomes]
rs987418	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72219800-72242600	Weak transcription	Left Ventricle	heart
2	chr9:72232200-72239800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:72234800-72237800	Weak transcription	Fetal Kidney	kidney
4	chr9:72236000-72240600	Enhancers	Fetal Brain Male	brain
5	chr9:72236200-72238400	Enhancers	Brain Angular Gyrus	brain
6	chr9:72236400-72238800	Enhancers	Fetal Lung	lung
7	chr9:72236600-72237800	Enhancers	Fetal Brain Female	brain
8	chr9:72236600-72238000	Enhancers	Brain Germinal Matrix	brain
9	chr9:72236800-72238000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:72236800-72238000	Enhancers	Brain Anterior Caudate	brain
11	chr9:72236800-72238200	Enhancers	Brain Cingulate Gyrus	brain
12	chr9:72236800-72238200	Enhancers	Brain Hippocampus Middle	brain
13	chr9:72236800-72238200	Enhancers	Fetal Muscle Leg	muscle
14	chr9:72236800-72238200	Enhancers	NH-A	brain
15	chr9:72236800-72239600	Enhancers	Liver	Liver
16	chr9:72237000-72238000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:72237000-72238000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:72237000-72238000	Enhancers	Osteobl	bone
19	chr9:72237000-72238200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:72237200-72237800	Enhancers	NHDF-Ad	bronchial
21	chr9:72237200-72237800	Enhancers	NHEK	skin
22	chr9:72237200-72238000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:72237200-72238000	Enhancers	HMEC	breast
24	chr9:72237200-72238200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:72237200-72238200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr9:72237200-72238200	Enhancers	Brain Substantia Nigra	brain
27	chr9:72237200-72238400	Enhancers	Fetal Stomach	stomach
28	chr9:72237200-72238800	Enhancers	Ovary	ovary
29	chr9:72237400-72238200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:72237600-72238000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:72237600-72238200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr9:72237600-72239200	Enhancers	Fetal Heart	heart

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