Variant report

Variant	rs7857826
Chromosome Location	chr9:17843594-17843595
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1049430	0.86[EUR][1000 genomes]
rs10756917	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10756918	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810852	0.81[AMR][1000 genomes]
rs10810853	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810854	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10963281	0.82[AMR][1000 genomes]
rs10963285	0.83[ASN][1000 genomes]
rs12552903	0.89[ASN][1000 genomes]
rs12555445	0.89[ASN][1000 genomes]
rs12555732	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13288654	0.84[ASN][1000 genomes]
rs35956180	0.88[ASN][1000 genomes]
rs4284124	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4302936	0.82[AMR][1000 genomes]
rs4373621	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4391525	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4510955	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4523358	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4599896	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4961449	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4961450	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4961451	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4961596	0.80[ASN][1000 genomes]
rs4961597	0.83[ASN][1000 genomes]
rs4961599	0.91[ASN][1000 genomes]
rs6475174	0.81[AMR][1000 genomes]
rs6475177	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6475178	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6475181	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018795	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7019050	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7023218	0.89[ASN][1000 genomes]
rs7025077	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7026318	0.89[ASN][1000 genomes]
rs7029727	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7039352	0.89[ASN][1000 genomes]
rs7041618	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72691895	0.89[ASN][1000 genomes]
rs7847005	0.85[ASN][1000 genomes]
rs7850617	0.89[ASN][1000 genomes]
rs7861909	0.88[ASN][1000 genomes]
rs7863227	0.91[ASN][1000 genomes]
rs7863603	0.91[ASN][1000 genomes]
rs7863806	0.90[ASN][1000 genomes]
rs7869721	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2761507	chr9:17810983-17901307	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17838600-17843800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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