Variant report

Variant	rs7858171
Chromosome Location	chr9:72160174-72160175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1029066	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10481751	1.00[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs10481752	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs10867655	0.82[EUR][1000 genomes]
rs10867656	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs10867728	0.90[ASN][1000 genomes]
rs11139154	0.96[ASN][1000 genomes]
rs1330329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1331973	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1331976	0.82[EUR][1000 genomes]
rs1888834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2150878	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2777862	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2777863	0.80[EUR][1000 genomes]
rs2777865	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4323531	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744571	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs4744906	1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4744907	0.92[ASN][1000 genomes]
rs6559613	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7019125	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028234	0.96[ASN][1000 genomes]
rs7046648	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7850318	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7850597	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7866199	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7872660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs879767	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs914551	0.93[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv466413	chr9:72100051-72160174	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv614575	chr9:72100051-72160174	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72132200-72163000	Weak transcription	Aorta	Aorta
2	chr9:72158200-72163000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:72158200-72163800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:72158400-72161000	Weak transcription	Fetal Brain Male	brain
5	chr9:72158400-72164200	Weak transcription	Left Ventricle	heart
6	chr9:72158600-72161200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:72158600-72161200	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:72158600-72163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:72158600-72163600	Weak transcription	Brain Angular Gyrus	brain
10	chr9:72158800-72161000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:72158800-72161000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:72158800-72163200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:72158800-72163400	Weak transcription	Brain Anterior Caudate	brain
14	chr9:72158800-72163400	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:72158800-72163400	Weak transcription	Brain Substantia Nigra	brain
16	chr9:72158800-72164200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr9:72158800-72164200	Weak transcription	Liver	Liver
18	chr9:72158800-72166000	Weak transcription	Fetal Heart	heart
19	chr9:72159200-72161200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:72159200-72161800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:72159200-72163600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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