Variant report

Variant	rs7859072
Chromosome Location	chr9:26668061-26668062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10117056	1.00[AMR][1000 genomes]
rs7022874	1.00[AMR][1000 genomes]
rs7032890	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7037307	1.00[AMR][1000 genomes]
rs7037418	1.00[AMR][1000 genomes]
rs7037500	1.00[AMR][1000 genomes]
rs7037503	1.00[AMR][1000 genomes]
rs7037543	1.00[AMR][1000 genomes]
rs7038921	1.00[AMR][1000 genomes]
rs7858094	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7863382	1.00[AMR][1000 genomes]
rs7874067	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1022674	chr9:26453723-26668102	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020439	chr9:26453723-26669855	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1022289	chr9:26453723-26670583	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv892858	chr9:26609613-26783463	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv466330	chr9:26641557-26691668	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
8	nsv613939	chr9:26641557-26691668	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
9	nsv466331	chr9:26643035-26689442	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
10	nsv613940	chr9:26643035-26689442	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
11	nsv892859	chr9:26643035-26691668	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26667400-26670800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:26667600-26673000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:26667800-26668200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:26667800-26670000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:26667800-26670600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:26668000-26668200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:26668000-26669800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:26668000-26672600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:26668000-26678400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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