Variant report

Variant	rs7859226
Chromosome Location	chr9:16430599-16430600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4961718	0.86[JPT][hapmap]
rs9298764	0.80[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16416200-16435400	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:16418000-16435600	Weak transcription	HUVEC	blood vessel
3	chr9:16418200-16435800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:16419400-16436200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:16419600-16435200	Weak transcription	Fetal Intestine Large	intestine
6	chr9:16419600-16435400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:16419600-16435400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr9:16419800-16432600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:16421800-16431800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:16421800-16460400	Weak transcription	Aorta	Aorta
11	chr9:16422000-16435400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:16422800-16435400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:16426000-16431800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:16426000-16442600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:16426200-16431800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:16426200-16434200	Weak transcription	NHDF-Ad	bronchial
17	chr9:16426200-16434400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:16426200-16434400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:16426200-16435400	Weak transcription	Fetal Lung	lung
20	chr9:16426200-16435400	Weak transcription	Fetal Stomach	stomach
21	chr9:16426200-16435400	Weak transcription	HSMMtube	muscle
22	chr9:16426200-16436000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:16426200-16442600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:16426200-16445200	Weak transcription	Adipose Nuclei	Adipose
25	chr9:16426600-16431600	Weak transcription	Right Atrium	heart
26	chr9:16426600-16435400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr9:16426600-16436000	Weak transcription	A549	lung
28	chr9:16427000-16433200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:16427000-16434400	Weak transcription	NHLF	lung
30	chr9:16427200-16434400	Weak transcription	NH-A	brain
31	chr9:16427400-16442600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:16427600-16430600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:16427800-16433400	Weak transcription	HSMM	muscle
34	chr9:16428400-16441800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr9:16428400-16442000	Weak transcription	Colon Smooth Muscle	Colon
36	chr9:16429000-16430600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:16429600-16430600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:16429600-16430600	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr9:16429600-16430800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:16429600-16436600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:16429800-16430600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr9:16429800-16430600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr9:16429800-16430800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:16430000-16434600	Weak transcription	Osteobl	bone
45	chr9:16430000-16435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:16430200-16431800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr9:16430200-16432000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:16430200-16435200	Weak transcription	Ovary	ovary
49	chr9:16430400-16431400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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