Variant report

Variant	rs7859882
Chromosome Location	chr9:17740108-17740109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10491540	0.86[EUR][1000 genomes]
rs10810850	0.83[EUR][1000 genomes]
rs10963249	0.86[EUR][1000 genomes]
rs10963254	0.86[EUR][1000 genomes]
rs10963258	0.85[EUR][1000 genomes]
rs10963261	0.83[EUR][1000 genomes]
rs10963262	0.83[EUR][1000 genomes]
rs10963263	0.83[EUR][1000 genomes]
rs10963264	0.83[EUR][1000 genomes]
rs10963265	0.84[EUR][1000 genomes]
rs10963267	0.84[EUR][1000 genomes]
rs10963268	0.83[EUR][1000 genomes]
rs12005953	0.83[EUR][1000 genomes]
rs12379450	0.83[EUR][1000 genomes]
rs13284953	0.82[EUR][1000 genomes]
rs13291415	0.83[EUR][1000 genomes]
rs13291891	0.88[EUR][1000 genomes]
rs34106908	0.83[EUR][1000 genomes]
rs34609165	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36045574	0.85[EUR][1000 genomes]
rs41305339	0.80[EUR][1000 genomes]
rs62549699	0.82[EUR][1000 genomes]
rs62549703	0.86[EUR][1000 genomes]
rs7044550	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1033892	chr9:17734224-17757581	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17739200-17741800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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