Variant report

Variant	rs7860623
Chromosome Location	chr9:15559693-15559694
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1039813	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1039814	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10481557	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10738400	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10738402	0.83[EUR][1000 genomes]
rs10738404	0.81[EUR][1000 genomes]
rs10738405	0.81[EUR][1000 genomes]
rs10738406	0.81[EUR][1000 genomes]
rs10756670	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10756671	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10756672	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10756674	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10756676	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10756677	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10756678	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10756679	0.87[EUR][1000 genomes]
rs10756680	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10756686	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10756687	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10756688	0.87[EUR][1000 genomes]
rs10756689	0.87[EUR][1000 genomes]
rs10756690	0.84[EUR][1000 genomes]
rs10756694	0.81[EUR][1000 genomes]
rs10756695	0.80[EUR][1000 genomes]
rs10810397	0.80[AMR][1000 genomes]
rs10810399	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10810400	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10810401	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810402	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810405	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810407	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10810408	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810409	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10810428	0.84[EUR][1000 genomes]
rs10810431	0.81[EUR][1000 genomes]
rs10810432	0.81[EUR][1000 genomes]
rs10810433	0.81[EUR][1000 genomes]
rs10810434	0.81[EUR][1000 genomes]
rs10962064	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962065	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962066	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10962070	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10962072	0.92[EUR][1000 genomes]
rs10962073	0.91[EUR][1000 genomes]
rs10962098	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10962099	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10962110	0.87[EUR][1000 genomes]
rs11789563	0.81[EUR][1000 genomes]
rs12340969	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13291638	0.88[EUR][1000 genomes]
rs1396707	0.81[EUR][1000 genomes]
rs1396708	0.80[EUR][1000 genomes]
rs1533040	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1553728	0.86[EUR][1000 genomes]
rs1812686	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2055772	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2136355	0.81[EUR][1000 genomes]
rs2175082	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2382532	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2382534	0.81[EUR][1000 genomes]
rs2457265	0.83[ASN][1000 genomes]
rs276447	0.86[ASN][1000 genomes]
rs276448	0.86[ASN][1000 genomes]
rs276453	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs276454	0.80[ASN][1000 genomes]
rs276455	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3955162	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4281189	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs432452	0.82[ASN][1000 genomes]
rs4339736	0.84[EUR][1000 genomes]
rs440229	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4448380	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4740614	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4740615	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4740618	0.85[EUR][1000 genomes]
rs4740619	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4740620	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4740621	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4740622	0.81[EUR][1000 genomes]
rs4741510	0.82[EUR][1000 genomes]
rs4741515	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4741517	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4741519	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4741520	0.84[EUR][1000 genomes]
rs4741528	0.87[EUR][1000 genomes]
rs4741529	0.87[EUR][1000 genomes]
rs4741534	0.81[EUR][1000 genomes]
rs6474930	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6474931	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474942	0.86[EUR][1000 genomes]
rs6474944	0.86[EUR][1000 genomes]
rs6474945	0.87[EUR][1000 genomes]
rs6474953	0.81[EUR][1000 genomes]
rs6474954	0.81[EUR][1000 genomes]
rs6474955	0.81[EUR][1000 genomes]
rs7020760	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7020983	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7024640	0.81[EUR][1000 genomes]
rs7025669	0.87[EUR][1000 genomes]
rs7032755	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7032877	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7036172	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7036674	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7044122	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7049101	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7049176	0.86[EUR][1000 genomes]
rs7389047	0.87[EUR][1000 genomes]
rs7389629	0.81[EUR][1000 genomes]
rs770524	0.87[ASN][1000 genomes]
rs7847144	0.81[EUR][1000 genomes]
rs7854714	0.84[EUR][1000 genomes]
rs7855235	0.81[EUR][1000 genomes]
rs7859780	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7863088	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7873152	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7874533	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7875367	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9407624	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9650677	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9696751	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9886779	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15553800-15576200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:15553800-15580600	Weak transcription	Ovary	ovary
3	chr9:15553800-15592600	Weak transcription	Left Ventricle	heart
4	chr9:15554000-15564400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:15554000-15590200	Weak transcription	Fetal Stomach	stomach
6	chr9:15554400-15579400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15554600-15563600	Weak transcription	Fetal Thymus	thymus
8	chr9:15554600-15580800	Weak transcription	Brain Anterior Caudate	brain
9	chr9:15554800-15560800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:15555600-15561600	Weak transcription	Thymus	Thymus
11	chr9:15559400-15559800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:15559600-15560400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:15559600-15561800	Strong transcription	Primary hematopoietic stem cells	blood

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