Variant report

Variant	rs7860931
Chromosome Location	chr9:72211325-72211326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10867853	1.00[CHB][hapmap]
rs10867859	1.00[CHB][hapmap]
rs11139473	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11139605	1.00[CHB][hapmap]
rs12376278	1.00[CHB][hapmap]
rs12379484	0.83[ASN][1000 genomes]
rs4629937	1.00[CHB][hapmap]
rs6559671	1.00[CHB][hapmap]
rs7020412	1.00[CHB][hapmap]
rs7033141	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72719028	0.83[ASN][1000 genomes]
rs7851932	1.00[CHB][hapmap]
rs7853648	1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7861901	0.82[ASN][1000 genomes]
rs7868291	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7860931	APBA1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72207000-72216600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:72207800-72220200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:72208600-72217400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:72209200-72214600	Weak transcription	Ovary	ovary
5	chr9:72209200-72214600	Weak transcription	Right Ventricle	heart
6	chr9:72209200-72219600	Weak transcription	Gastric	stomach
7	chr9:72209400-72211600	Weak transcription	Liver	Liver
8	chr9:72209400-72214200	Weak transcription	Fetal Heart	heart
9	chr9:72209400-72214600	Weak transcription	Right Atrium	heart
10	chr9:72209400-72215000	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:72209800-72217600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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