Variant report

Variant	rs7861451
Chromosome Location	chr9:72132878-72132879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11139414	0.85[EUR][1000 genomes]
rs11999656	0.83[EUR][1000 genomes]
rs12000827	0.85[EUR][1000 genomes]
rs12000908	0.85[EUR][1000 genomes]
rs12001157	0.86[AFR][1000 genomes]
rs12006272	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12552474	0.85[EUR][1000 genomes]
rs12553894	0.85[EUR][1000 genomes]
rs12553941	0.83[EUR][1000 genomes]
rs12554978	0.85[EUR][1000 genomes]
rs12555100	0.85[EUR][1000 genomes]
rs12555572	0.91[AFR][1000 genomes]
rs1334309	0.89[AFR][1000 genomes]
rs1411439	0.83[EUR][1000 genomes]
rs1411441	0.83[EUR][1000 genomes]
rs1411442	0.83[EUR][1000 genomes]
rs4636268	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56654380	0.83[EUR][1000 genomes]
rs57512468	0.85[EUR][1000 genomes]
rs58638129	0.85[EUR][1000 genomes]
rs58667541	0.83[EUR][1000 genomes]
rs58898534	0.85[EUR][1000 genomes]
rs59791186	0.83[EUR][1000 genomes]
rs60759202	0.83[EUR][1000 genomes]
rs7036538	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72717199	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72719005	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72719017	1.00[EUR][1000 genomes]
rs72719024	0.87[EUR][1000 genomes]
rs73647250	1.00[EUR][1000 genomes]
rs73647252	0.85[EUR][1000 genomes]
rs73647254	0.85[EUR][1000 genomes]
rs73647255	0.85[EUR][1000 genomes]
rs73647256	0.85[EUR][1000 genomes]
rs73647257	0.85[EUR][1000 genomes]
rs73647259	0.83[EUR][1000 genomes]
rs73647260	0.83[EUR][1000 genomes]
rs7849601	0.83[EUR][1000 genomes]
rs7862458	0.93[AFR][1000 genomes]
rs7871753	0.88[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1047593	chr9:71971536-72180583	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1035633	chr9:71995963-72176984	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1048650	chr9:72028458-72179847	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1039966	chr9:72057304-72181564	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430068	chr9:72090806-72134376	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv466399	chr9:72091413-72134376	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv614569	chr9:72091413-72134376	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv893434	chr9:72091413-72134376	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv893435	chr9:72091413-72147700	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv430070	chr9:72100046-72134376	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv430071	chr9:72100046-72134427	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv34446	chr9:72100051-72134376	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv614573	chr9:72100051-72134376	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv614574	chr9:72100051-72152776	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv466413	chr9:72100051-72160174	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv614575	chr9:72100051-72160174	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv2757341	chr9:72100569-72134376	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv2759695	chr9:72100569-72134376	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72120600-72133400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:72128400-72134600	Weak transcription	Left Ventricle	heart
3	chr9:72128800-72133200	Weak transcription	Brain Substantia Nigra	brain
4	chr9:72130000-72136600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:72130600-72134000	Weak transcription	HepG2	liver
6	chr9:72131000-72133200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:72131000-72133400	Weak transcription	Brain Anterior Caudate	brain
8	chr9:72131400-72133400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:72131600-72133200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:72131800-72133600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:72131800-72133800	Weak transcription	Brain Angular Gyrus	brain
12	chr9:72131800-72134800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:72131800-72137600	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:72131800-72139400	Weak transcription	Fetal Intestine Small	intestine
15	chr9:72132000-72133800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:72132000-72134000	Weak transcription	Pancreas	Pancrea
17	chr9:72132000-72134200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:72132200-72134000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:72132200-72134000	Weak transcription	Liver	Liver
20	chr9:72132200-72134400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr9:72132200-72134600	Weak transcription	Right Ventricle	heart
22	chr9:72132200-72136200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:72132200-72141600	Weak transcription	Ovary	ovary
24	chr9:72132200-72163000	Weak transcription	Aorta	Aorta
25	chr9:72132400-72137400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:72132600-72134200	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links