Variant report
Variant | rs7861533 |
---|---|
Chromosome Location | chr9:15878218-15878219 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr9:15876069..15878996-chr9:15881161..15882668,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10962193 | 0.93[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs10962194 | 0.93[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs1169470 | 0.84[ASN][1000 genomes] |
rs1169474 | 0.83[ASN][1000 genomes] |
rs1177610 | 0.83[ASN][1000 genomes] |
rs1177611 | 0.83[ASN][1000 genomes] |
rs1185652 | 0.83[ASN][1000 genomes] |
rs11999303 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12005062 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12005485 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12005521 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12683523 | 0.86[ASN][1000 genomes] |
rs12683980 | 1.00[AMR][1000 genomes] |
rs12684485 | 0.81[AFR][1000 genomes];0.82[ASN][1000 genomes] |
rs12684785 | 1.00[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs12684808 | 0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs12685476 | 1.00[AMR][1000 genomes] |
rs12685963 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12686591 | 1.00[AMR][1000 genomes] |
rs1328266 | 1.00[AMR][1000 genomes] |
rs1328267 | 1.00[AMR][1000 genomes] |
rs1328268 | 1.00[AMR][1000 genomes] |
rs1328281 | 0.84[ASN][1000 genomes] |
rs1396705 | 1.00[EUR][1000 genomes] |
rs1536685 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs16933504 | 1.00[EUR][1000 genomes] |
rs16933544 | 1.00[EUR][1000 genomes] |
rs16933603 | 0.82[AFR][1000 genomes] |
rs16933626 | 0.82[AFR][1000 genomes] |
rs16933805 | 0.93[ASN][1000 genomes] |
rs16933814 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs1752777 | 0.83[ASN][1000 genomes] |
rs1815697 | 0.84[ASN][1000 genomes] |
rs1935220 | 0.82[ASN][1000 genomes] |
rs1935221 | 0.82[ASN][1000 genomes] |
rs2066291 | 0.90[AFR][1000 genomes] |
rs2105313 | 0.82[ASN][1000 genomes] |
rs2105314 | 0.82[ASN][1000 genomes] |
rs2794624 | 0.82[ASN][1000 genomes] |
rs2794625 | 0.83[ASN][1000 genomes] |
rs2794626 | 0.82[ASN][1000 genomes] |
rs2794627 | 0.82[ASN][1000 genomes] |
rs2794628 | 0.82[ASN][1000 genomes] |
rs2794629 | 0.83[ASN][1000 genomes] |
rs2794632 | 0.84[ASN][1000 genomes] |
rs2794633 | 0.84[ASN][1000 genomes] |
rs2987045 | 0.83[ASN][1000 genomes] |
rs2995024 | 0.83[ASN][1000 genomes] |
rs2995025 | 0.83[ASN][1000 genomes] |
rs34816651 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs57592105 | 0.83[ASN][1000 genomes] |
rs59761231 | 0.81[ASN][1000 genomes] |
rs59779354 | 0.86[ASN][1000 genomes] |
rs59923163 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs60354508 | 0.81[AMR][1000 genomes] |
rs60572069 | 1.00[EUR][1000 genomes] |
rs6474968 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7022810 | 0.84[ASN][1000 genomes] |
rs7026090 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7026629 | 0.81[AFR][1000 genomes] |
rs7028328 | 0.82[ASN][1000 genomes] |
rs7029375 | 0.93[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs7029410 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7032595 | 1.00[EUR][1000 genomes] |
rs7035048 | 1.00[EUR][1000 genomes] |
rs7040071 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7040549 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7040580 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7040928 | 1.00[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs7044984 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs7048479 | 0.84[AFR][1000 genomes] |
rs73411567 | 0.81[AMR][1000 genomes] |
rs73411570 | 0.81[AMR][1000 genomes] |
rs73411572 | 0.81[AMR][1000 genomes] |
rs73416209 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73416213 | 1.00[EUR][1000 genomes] |
rs73416233 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73416254 | 1.00[EUR][1000 genomes] |
rs73416261 | 1.00[EUR][1000 genomes] |
rs73416285 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs73418137 | 0.82[AFR][1000 genomes] |
rs73422714 | 0.83[ASN][1000 genomes] |
rs73422737 | 0.86[ASN][1000 genomes] |
rs7388793 | 0.82[ASN][1000 genomes] |
rs770192 | 0.82[ASN][1000 genomes] |
rs770194 | 0.82[ASN][1000 genomes] |
rs770198 | 0.82[ASN][1000 genomes] |
rs770199 | 0.82[ASN][1000 genomes] |
rs770200 | 0.82[ASN][1000 genomes] |
rs770201 | 0.82[ASN][1000 genomes] |
rs770207 | 0.81[ASN][1000 genomes] |
rs770219 | 0.80[ASN][1000 genomes] |
rs7847946 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7856304 | 0.93[AFR][1000 genomes];0.86[ASN][1000 genomes] |
rs7865705 | 0.82[AFR][1000 genomes] |
rs7866472 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs7866699 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7867018 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7867521 | 0.92[AFR][1000 genomes];0.86[ASN][1000 genomes] |
rs7869609 | 1.00[EUR][1000 genomes] |
rs7870166 | 1.00[EUR][1000 genomes] |
rs7870244 | 1.00[EUR][1000 genomes] |
rs809493 | 0.81[ASN][1000 genomes] |
rs906798 | 0.84[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv892625 | chr9:15326251-16064850 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
2 | nsv892627 | chr9:15397969-15909450 | Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
3 | nsv892633 | chr9:15604746-15889411 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv1015435 | chr9:15841107-15880385 | Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv1027790 | chr9:15845902-15878841 | Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:15857800-15885400 | Weak transcription | Primary hematopoietic stem cells | blood |
2 | chr9:15874600-15878400 | Weak transcription | HSMMtube | muscle |
3 | chr9:15877000-15903400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
4 | chr9:15877400-15885800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
5 | chr9:15877600-15888400 | Weak transcription | Pancreas | Pancrea |
6 | chr9:15878200-15879000 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |