Variant report

Variant	rs78639956
Chromosome Location	chr5:16124946-16124947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3494749	chr5:16124102-16126500	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
3	esv3468868	chr5:16124662-16125601	Strong transcription Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
4	esv3428323	chr5:16124683-16125574	Strong transcription Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
5	esv3494746	chr5:16124705-16125602	Enhancers Strong transcription Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
6	esv3468867	chr5:16124720-16125574	Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
7	esv3494747	chr5:16124728-16125534	Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
8	esv3468866	chr5:16124734-16125534	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
9	esv3494748	chr5:16124740-16125541	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
10	nsv471738	chr5:16124796-16125501	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
11	esv3468869	chr5:16124811-16125492	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
12	esv3494750	chr5:16124811-16125492	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
13	esv14296	chr5:16124833-16125678	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
14	nsv597293	chr5:16124855-16125503	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
15	nsv597294	chr5:16124855-16125555	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
16	esv3489216	chr5:16124933-16125541	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
17	esv3489217	chr5:16124933-16125541	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16123400-16125400	Weak transcription	Fetal Heart	heart
2	chr5:16124800-16127600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links