Variant report

Variant	rs78644681
Chromosome Location	chr15:79244112-79244113
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr15:79244091-79244759	HepG2	liver:	n/a	n/a
2	TCF7L2	chr15:79243736-79244574	PANC-1	pancreas:	n/a	chr15:79244453-79244462
3	SIN3AK20	chr15:79243896-79244887	MCF-7	breast:	n/a	n/a
4	GATA3	chr15:79244034-79244862	MCF-7	breast:	n/a	chr15:79244746-79244755 chr15:79244747-79244764 chr15:79244508-79244517 chr15:79244746-79244753 chr15:79244507-79244519 chr15:79244505-79244521
5	RUNX3	chr15:79243735-79244219	GM12878	blood:	n/a	n/a
6	GATA2	chr15:79244099-79244622	HUVEC	blood vessel:	n/a	chr15:79244508-79244517 chr15:79244507-79244519 chr15:79244505-79244521
7	FOXA2	chr15:79243947-79244776	A549	lung:	n/a	n/a
8	GATA3	chr15:79244094-79244806	MCF-7	breast:	n/a	chr15:79244746-79244755 chr15:79244747-79244764 chr15:79244508-79244517 chr15:79244746-79244753 chr15:79244507-79244519 chr15:79244505-79244521
9	EBF1	chr15:79243855-79244132	GM12878	blood:	n/a	n/a
10	JUN	chr15:79244052-79244795	K562	blood:	n/a	chr15:79244453-79244462
11	RUNX3	chr15:79243739-79244268	GM12878	blood:	n/a	n/a
12	FOSL2	chr15:79244003-79244755	MCF-7	breast:	n/a	chr15:79244453-79244462
13	GATA3	chr15:79244038-79244869	A549	lung:	n/a	chr15:79244746-79244755 chr15:79244747-79244764 chr15:79244508-79244517 chr15:79244746-79244753 chr15:79244507-79244519 chr15:79244505-79244521
14	WRNIP1	chr15:79243960-79244193	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:79198022..79200286-chr15:79243264..79245188,2	K562	blood:
2	chr15:79242855..79244395-chr15:79271553..79274104,2	MCF-7	breast:
3	chr15:79242274..79244417-chr15:79247042..79249871,2	MCF-7	breast:
4	chr15:79242281..79244797-chr15:79245388..79247150,2	K562	blood:
5	chr15:79238657..79240315-chr15:79242629..79245251,2	K562	blood:

Variant related genes	Relation type
CTSH	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79237800-79244200	Weak transcription	Psoas Muscle	Psoas
2	chr15:79238600-79244200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:79238600-79252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:79240800-79245400	Enhancers	Stomach Mucosa	stomach
5	chr15:79241000-79245200	Enhancers	Liver	Liver
6	chr15:79241600-79244200	Enhancers	Gastric	stomach
7	chr15:79241600-79245000	Enhancers	Pancreas	Pancrea
8	chr15:79241800-79244800	Enhancers	Fetal Intestine Large	intestine
9	chr15:79242000-79245400	Enhancers	Duodenum Mucosa	Duodenum
10	chr15:79242200-79244400	Enhancers	Fetal Kidney	kidney
11	chr15:79242200-79244800	Enhancers	Lung	lung
12	chr15:79242400-79244200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr15:79242400-79244400	Enhancers	Adipose Nuclei	Adipose
14	chr15:79242400-79244800	Enhancers	Left Ventricle	heart
15	chr15:79242600-79245000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr15:79242800-79244200	Weak transcription	Fetal Intestine Small	intestine
17	chr15:79243000-79244600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:79243200-79244200	Enhancers	Fetal Muscle Leg	muscle
19	chr15:79243200-79244600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr15:79243200-79244600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:79243200-79244600	Enhancers	A549	lung
22	chr15:79243200-79244600	Enhancers	GM12878-XiMat	blood
23	chr15:79243200-79244800	Enhancers	HMEC	breast
24	chr15:79243200-79245000	Enhancers	Primary B cells from peripheral blood	blood
25	chr15:79243200-79245000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:79243200-79245400	Enhancers	Hela-S3	cervix
27	chr15:79243400-79244200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:79243400-79244200	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr15:79243400-79244400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:79243400-79244600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr15:79243400-79244600	Enhancers	Fetal Lung	lung
32	chr15:79243400-79244800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr15:79243400-79244800	Enhancers	Ovary	ovary
34	chr15:79243600-79244200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr15:79243600-79244200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:79243600-79244200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:79243600-79244400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:79243600-79244400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:79243600-79244400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:79243600-79244400	Enhancers	Small Intestine	intestine
41	chr15:79243600-79244400	Enhancers	HSMM	muscle
42	chr15:79243600-79244400	Enhancers	HUVEC	blood vessel
43	chr15:79243600-79244400	Enhancers	NH-A	brain
44	chr15:79243600-79244400	Enhancers	Osteobl	bone
45	chr15:79243600-79244600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr15:79243600-79244600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:79243600-79244800	Enhancers	Primary B cells from cord blood	blood
48	chr15:79243600-79244800	Enhancers	Right Atrium	heart
49	chr15:79243600-79245000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr15:79243600-79245400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links