Variant report

Variant	rs7866898
Chromosome Location	chr9:17657363-17657364
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1000770	0.82[EUR][1000 genomes]
rs10738482	0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10756895	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10810817	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810822	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs1536064	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1536065	0.81[EUR][1000 genomes]
rs1536073	0.82[YRI][hapmap]
rs2025559	0.85[EUR][1000 genomes]
rs2147736	0.87[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2182084	0.87[CEU][hapmap];0.95[YRI][hapmap]
rs2182086	0.87[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2182087	0.90[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2182090	0.87[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2209434	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2209435	0.87[CEU][hapmap]
rs3780234	0.87[CEU][hapmap]
rs3780235	0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3780236	0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3808700	0.83[EUR][1000 genomes]
rs3808718	0.87[CEU][hapmap];0.95[YRI][hapmap]
rs3808723	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3808726	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs3824383	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4418424	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs4578059	0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7020158	0.86[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7021836	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7031459	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs717373	0.84[EUR][1000 genomes]
rs7350202	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs7847174	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7847297	0.83[EUR][1000 genomes]
rs7856894	0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7862689	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7866654	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7870919	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs7874762	0.95[YRI][hapmap]
rs7875763	0.87[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs961372	0.87[CEU][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs998599	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892674	chr9:17631186-17699981	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1016971	chr9:17648242-17720176	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1021022	chr9:17649360-17723730	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17656000-17660000	Weak transcription	Fetal Brain Female	brain
2	chr9:17657000-17658400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr9:17657000-17659000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:17657200-17657400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr9:17657200-17657400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:17657200-17657800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:17657200-17657800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:17657200-17657800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:17657200-17658000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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