Variant report

Variant	rs7868779
Chromosome Location	chr9:15709795-15709796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10119975	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121393	0.88[ASN][1000 genomes]
rs10738403	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10738404	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10738405	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10738406	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10756680	0.80[EUR][1000 genomes]
rs10756687	0.81[EUR][1000 genomes]
rs10756688	0.82[EUR][1000 genomes]
rs10756689	0.82[EUR][1000 genomes]
rs10756690	0.87[EUR][1000 genomes]
rs10756691	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756692	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10756693	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10756694	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10756695	0.90[EUR][1000 genomes]
rs10756696	0.88[EUR][1000 genomes]
rs10756697	0.87[EUR][1000 genomes]
rs10810409	0.80[EUR][1000 genomes]
rs10810428	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810429	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810430	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810431	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810432	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810433	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810434	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810435	0.88[EUR][1000 genomes]
rs10810436	0.88[EUR][1000 genomes]
rs10810442	0.81[AMR][1000 genomes]
rs10962110	0.80[EUR][1000 genomes]
rs10962118	0.97[ASN][1000 genomes]
rs10962121	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10962123	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10962124	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10962125	0.81[EUR][1000 genomes]
rs10962126	0.81[EUR][1000 genomes]
rs10962149	0.82[AMR][1000 genomes]
rs11789538	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11789563	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11791627	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11793900	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12004358	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12340969	0.80[EUR][1000 genomes]
rs12349323	0.80[EUR][1000 genomes]
rs12352779	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1396707	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1396708	0.90[EUR][1000 genomes]
rs1509310	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1533040	0.81[EUR][1000 genomes]
rs1553728	0.84[EUR][1000 genomes]
rs2136355	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2175080	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2382532	0.84[EUR][1000 genomes]
rs2382534	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28410434	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28785887	0.96[ASN][1000 genomes]
rs35057009	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35146544	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36086644	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4339736	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4740619	0.81[EUR][1000 genomes]
rs4740620	0.81[EUR][1000 genomes]
rs4741519	0.81[EUR][1000 genomes]
rs4741528	0.82[EUR][1000 genomes]
rs4741529	0.80[EUR][1000 genomes]
rs4741534	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4741535	0.86[EUR][1000 genomes]
rs62573118	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474942	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6474944	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474945	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6474951	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474952	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474953	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6474954	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474955	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6474966	0.82[AMR][1000 genomes]
rs7019430	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7024640	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7025669	0.82[EUR][1000 genomes]
rs7033236	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7036172	0.81[EUR][1000 genomes]
rs7036285	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036674	0.81[EUR][1000 genomes]
rs7037662	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7037908	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7045018	0.82[AMR][1000 genomes]
rs7049176	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7847144	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7854714	0.87[EUR][1000 genomes]
rs7855235	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859780	0.81[EUR][1000 genomes]
rs7861004	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7863088	0.81[EUR][1000 genomes]
rs954663	0.98[ASN][1000 genomes]
rs954664	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15669000-15720800	Weak transcription	Gastric	stomach
2	chr9:15676600-15725000	Weak transcription	Pancreas	Pancrea
3	chr9:15679800-15746800	Weak transcription	Ovary	ovary
4	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
5	chr9:15690400-15721800	Weak transcription	Fetal Lung	lung
6	chr9:15691800-15717000	Weak transcription	Thymus	Thymus
7	chr9:15699600-15717400	Weak transcription	Fetal Stomach	stomach
8	chr9:15699600-15728200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:15704000-15716600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:15704600-15719800	Weak transcription	Right Ventricle	heart
11	chr9:15706600-15712200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:15708600-15712600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:15709200-15711800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links