Variant report

Variant	rs7871604
Chromosome Location	chr9:15530154-15530155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr9:15529614-15530340	GM12878	blood:	n/a	n/a
2	MXI1	chr9:15529513-15530334	GM12878	blood:	n/a	n/a
3	MAX	chr9:15529894-15530269	H1-hESC	embryonic stem cell:	n/a	chr9:15530186-15530196 chr9:15530157-15530167
4	MTA3	chr9:15529513-15530424	GM12878	blood:	n/a	n/a
5	POLR2A	chr9:15529924-15530520	GM12891	blood:	n/a	n/a
6	WRNIP1	chr9:15529599-15530455	GM12878	blood:	n/a	n/a
7	NFATC1	chr9:15529504-15530493	GM12878	blood:	n/a	n/a
8	SP1	chr9:15529503-15530449	GM12878	blood:	n/a	n/a
9	RELA	chr9:15529495-15530476	GM12891	blood:	n/a	n/a
10	POLR2A	chr9:15529493-15530816	GM12878	blood:	n/a	n/a
11	STAT1	chr9:15529613-15530398	GM12878	blood:	n/a	n/a
12	MTA3	chr9:15529496-15530520	GM12878	blood:	n/a	n/a
13	POU2F2	chr9:15529517-15530525	GM12878	blood:	n/a	n/a
14	MAX	chr9:15529661-15530391	GM12878	blood:	n/a	chr9:15530186-15530196 chr9:15530157-15530167
15	NFE2	chr9:15529984-15530309	GM12878	blood:	n/a	n/a
16	EBF1	chr9:15529539-15530180	GM12878	blood:	n/a	n/a
17	EP300	chr9:15529564-15530401	GM12878	blood:	n/a	n/a
18	NFIC	chr9:15529475-15530434	GM12878	blood:	n/a	n/a
19	CREB1	chr9:15529596-15530451	GM12878	blood:	n/a	n/a
20	STAT5A	chr9:15529515-15530234	GM12878	blood:	n/a	n/a
21	NFATC1	chr9:15529486-15530407	GM12878	blood:	n/a	n/a
22	RELA	chr9:15529567-15530388	GM18505	blood:	n/a	n/a
23	SMC3	chr9:15529529-15530343	GM12878	blood:	n/a	n/a
24	RUNX3	chr9:15529491-15530494	GM12878	blood:	n/a	n/a
25	RUNX3	chr9:15529411-15530570	GM12878	blood:	n/a	n/a
26	STAT5A	chr9:15529485-15530285	GM12878	blood:	n/a	n/a
27	BATF	chr9:15529561-15530461	GM12878	blood:	n/a	n/a
28	POLR2A	chr9:15529881-15530544	GM12892	blood:	n/a	n/a
29	BCL11A	chr9:15529515-15530437	GM12878	blood:	n/a	n/a
30	PAX5	chr9:15529872-15530345	GM12878	blood:	n/a	n/a
31	TCF3	chr9:15529565-15530351	GM12878	blood:	n/a	n/a
32	POLR2A	chr9:15529990-15530418	GM12892	blood:	n/a	n/a
33	POLR2A	chr9:15530089-15530393	GM12891	blood:	n/a	n/a
34	EP300	chr9:15529535-15530434	GM12878	blood:	n/a	n/a
35	EP300	chr9:15529512-15530450	GM12878	blood:	n/a	n/a
36	RELA	chr9:15529564-15530431	GM18951	blood:	n/a	n/a
37	STAT3	chr9:15529593-15530327	GM12878	blood:	n/a	n/a
38	SIN3A	chr9:15529655-15530266	GM12878	blood:	n/a	n/a
39	POLR2A	chr9:15529865-15530729	GM12892	blood:	n/a	n/a
40	BCL11A	chr9:15529908-15530305	GM12878	blood:	n/a	n/a
41	SP1	chr9:15529544-15530426	GM12878	blood:	n/a	n/a
42	RELA	chr9:15529569-15530352	GM19099	blood:	n/a	n/a
43	RELA	chr9:15529492-15530454	GM12878	blood:	n/a	n/a
44	IRF4	chr9:15529534-15530325	GM12878	blood:	n/a	n/a
45	POU2F2	chr9:15529546-15530213	GM12878	blood:	n/a	n/a
46	CREB1	chr9:15529480-15530463	GM12878	blood:	n/a	n/a
47	FOXM1	chr9:15529463-15530509	GM12878	blood:	n/a	n/a
48	EBF1	chr9:15529500-15530477	GM12878	blood:	n/a	n/a
49	USF2	chr9:15529701-15530443	GM12878	blood:	n/a	n/a
50	PBX3	chr9:15529970-15530179	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
RN7SL98P	TF binding region
FTH1P12	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7034039	1.00[AMR][1000 genomes]
rs7036747	1.00[AMR][1000 genomes]
rs7853329	1.00[AMR][1000 genomes]
rs7867321	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15529600-15530200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr9:15529600-15530400	Flanking Active TSS	GM12878-XiMat	blood
3	chr9:15529800-15530200	Enhancers	Primary B cells from peripheral blood	blood
4	chr9:15529800-15530200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:15529800-15530200	Enhancers	Fetal Thymus	thymus

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