Variant report

Variant	rs7872598
Chromosome Location	chr9:72703587-72703588
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLF9-1	chr9:72703235-72703913	ENSG00000204706.10

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58351557	1.00[AMR][1000 genomes]
rs7021503	1.00[AMR][1000 genomes]
rs7024198	1.00[AMR][1000 genomes]
rs7027636	1.00[AMR][1000 genomes]
rs7032708	1.00[AMR][1000 genomes]
rs7037121	1.00[AMR][1000 genomes]
rs7042942	1.00[AMR][1000 genomes]
rs7046605	1.00[AMR][1000 genomes]
rs7049064	1.00[AMR][1000 genomes]
rs7855209	1.00[AMR][1000 genomes]
rs7864975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7873288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949052	chr9:72698039-72741247	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72694800-72704400	Enhancers	Rectal Smooth Muscle	rectum
2	chr9:72694800-72708200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:72694800-72721400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:72695400-72709200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:72696400-72706200	Weak transcription	Left Ventricle	heart
6	chr9:72696400-72706600	Weak transcription	Fetal Brain Female	brain
7	chr9:72696400-72708800	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:72696800-72705800	Weak transcription	HSMM	muscle
9	chr9:72698200-72706000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:72698200-72708800	Weak transcription	Psoas Muscle	Psoas
11	chr9:72698800-72711200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:72699000-72708800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:72701600-72706400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:72701600-72706600	Weak transcription	Adipose Nuclei	Adipose
15	chr9:72701800-72703600	Strong transcription	HSMMtube	muscle
16	chr9:72701800-72704000	Weak transcription	Fetal Stomach	stomach
17	chr9:72702000-72707200	Weak transcription	Pancreas	Pancrea
18	chr9:72702200-72703800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:72702200-72706000	Weak transcription	Ovary	ovary
20	chr9:72702200-72706200	Weak transcription	Right Ventricle	heart
21	chr9:72702400-72704000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:72703200-72711600	Enhancers	Colon Smooth Muscle	Colon

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