Variant report

Variant	rs7872912
Chromosome Location	chr9:15761077-15761078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 208 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs1009468	1.00[CHB][hapmap]
rs10119975	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10121393	0.81[AMR][1000 genomes]
rs10733295	0.83[YRI][hapmap]
rs10733301	0.80[EUR][1000 genomes]
rs10733302	0.80[EUR][1000 genomes]
rs10738411	0.81[EUR][1000 genomes]
rs10756677	0.88[CHB][hapmap]
rs10756686	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs10756687	0.84[CHB][hapmap]
rs10756688	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs10756689	0.89[CHB][hapmap]
rs10756690	0.84[CHB][hapmap]
rs10756691	0.81[AMR][1000 genomes]
rs10810426	0.88[YRI][hapmap]
rs10810427	0.84[CHB][hapmap];0.82[YRI][hapmap]
rs10810428	0.84[CHB][hapmap]
rs10810429	0.83[CHB][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes]
rs10810430	0.84[AMR][1000 genomes]
rs10810438	0.80[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810440	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810442	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10810446	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10962098	0.89[CHB][hapmap]
rs10962099	0.89[CHB][hapmap]
rs10962121	0.84[AMR][1000 genomes]
rs10962123	0.84[AMR][1000 genomes]
rs10962125	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10962126	0.88[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10962146	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10962147	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10962149	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10962152	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962153	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10962156	0.86[CEU][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10962170	1.00[CHB][hapmap]
rs11515218	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11521158	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1169478	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs1169479	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs1169480	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs11793900	0.85[AMR][1000 genomes]
rs12004358	0.84[AMR][1000 genomes]
rs12340969	0.83[CHB][hapmap]
rs12341679	0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12349323	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12352779	0.84[AMR][1000 genomes]
rs12377371	0.80[CEU][hapmap];0.89[CHB][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12378499	0.86[CEU][hapmap]
rs1328288	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs13283620	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13287834	0.86[CEU][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13295778	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13296276	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13302398	0.86[AFR][1000 genomes]
rs1341734	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1341735	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1355171	0.84[CHB][hapmap]
rs1355173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359953	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs1396706	0.83[CEU][hapmap];0.88[CHB][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1509310	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1533040	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs1539171	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1539172	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1539173	0.86[CEU][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1572978	1.00[CHB][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs1592099	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs169342	0.89[CHB][hapmap]
rs183928	0.89[CHB][hapmap]
rs1891211	0.80[JPT][hapmap]
rs1891212	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs1970497	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1984246	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs2066292	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs2096121	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105315	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs2149231	0.89[CHB][hapmap]
rs2153725	1.00[CHB][hapmap]
rs2153726	1.00[CHB][hapmap]
rs2153727	1.00[CHB][hapmap]
rs2175080	0.86[YRI][hapmap];0.84[AMR][1000 genomes]
rs2175082	0.83[CHB][hapmap]
rs2185663	0.86[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2185665	1.00[CHB][hapmap]
rs2382540	0.86[CEU][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2382553	1.00[CHB][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs276435	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs276436	0.89[CHB][hapmap]
rs276448	0.81[YRI][hapmap]
rs276449	0.84[YRI][hapmap]
rs2794634	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2794636	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs2821545	0.83[YRI][hapmap]
rs28403566	0.83[AMR][1000 genomes]
rs28410434	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28785887	0.81[AMR][1000 genomes]
rs2891007	1.00[CHB][hapmap]
rs2987069	0.89[CHB][hapmap]
rs2987070	1.00[CHB][hapmap]
rs2987071	1.00[CHB][hapmap]
rs2987072	1.00[CHB][hapmap]
rs3008686	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs34700988	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35057009	0.84[AMR][1000 genomes]
rs36013000	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36086644	0.84[AMR][1000 genomes]
rs36197458	0.81[AMR][1000 genomes]
rs432452	0.81[YRI][hapmap]
rs442549	0.85[YRI][hapmap]
rs451878	0.84[CHB][hapmap];0.86[YRI][hapmap]
rs4740619	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs4741519	0.89[CHB][hapmap]
rs4741528	0.89[CHB][hapmap]
rs4741534	0.82[CHB][hapmap]
rs58517712	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62571268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62571305	0.82[AMR][1000 genomes]
rs62573118	0.84[AMR][1000 genomes]
rs6474931	0.84[CHB][hapmap]
rs6474944	0.82[CHB][hapmap]
rs6474945	0.83[CHB][hapmap]
rs6474951	0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6474952	0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6474954	0.82[CHB][hapmap]
rs6474962	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6474963	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6474964	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6474965	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6474966	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474967	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7018872	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7019143	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7019205	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs7019323	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7019851	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7023275	0.84[CHB][hapmap]
rs7025420	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7025669	0.89[CHB][hapmap]
rs7027202	0.89[CHB][hapmap]
rs7028999	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7032457	1.00[CHB][hapmap]
rs7032634	1.00[CHB][hapmap]
rs7032755	0.83[JPT][hapmap]
rs7034484	0.87[CHB][hapmap]
rs7034781	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7035863	0.87[YRI][hapmap]
rs7036285	0.85[AMR][1000 genomes]
rs7036674	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs7036775	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7037662	0.83[AMR][1000 genomes]
rs7037908	0.83[AMR][1000 genomes]
rs7039881	0.84[YRI][hapmap]
rs7043770	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7045018	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7047045	1.00[CHB][hapmap]
rs7388793	0.84[YRI][hapmap]
rs7467156	0.80[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.97[YRI][hapmap]
rs7467207	0.83[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs770191	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs770200	0.84[YRI][hapmap]
rs770201	0.84[YRI][hapmap]
rs770207	0.84[YRI][hapmap]
rs770211	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs770213	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs770215	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs770524	0.81[YRI][hapmap]
rs7846970	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7853744	1.00[CHB][hapmap]
rs7860024	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7860528	0.83[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7860869	0.80[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7860992	0.83[AMR][1000 genomes]
rs7861802	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7863088	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs7866641	1.00[CHB][hapmap]
rs7866894	0.85[AFR][1000 genomes]
rs7869624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875367	0.83[YRI][hapmap]
rs9298738	1.00[CHB][hapmap]
rs9298739	1.00[CHB][hapmap];0.83[AFR][1000 genomes]
rs9298740	1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs9298741	1.00[CHB][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs9406537	1.00[CHB][hapmap]
rs9406542	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs9407648	1.00[CHB][hapmap]
rs9407649	1.00[CHB][hapmap]
rs9407650	1.00[CHB][hapmap]
rs9407651	1.00[CHB][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9407652	1.00[CHB][hapmap]
rs9407654	1.00[CHB][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs9407655	0.82[AFR][1000 genomes]
rs9407656	0.83[AFR][1000 genomes]
rs9407657	1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs9407658	0.83[AFR][1000 genomes]
rs9407661	1.00[CHB][hapmap]
rs9407662	1.00[CHB][hapmap];0.84[YRI][hapmap]
rs9407671	0.81[YRI][hapmap]
rs950234	0.81[EUR][1000 genomes]
rs954663	0.81[YRI][hapmap];0.82[AMR][1000 genomes]
rs954664	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15742600-15769600	Weak transcription	Psoas Muscle	Psoas
2	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15757800-15763200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15759200-15784400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:15760800-15761400	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links