Variant report
| Variant | rs7874191 |
|---|---|
| Chromosome Location | chr9:17731306-17731307 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr9:17731304-17731462 | Gliobla | brain: | n/a | n/a |
| 2 | POLR2A | chr9:17731298-17731554 | U87 | brain: | n/a | n/a |
| 3 | POLR2A | chr9:17731277-17731774 | K562 | blood: | n/a | n/a |
| 4 | POLR2A | chr9:17731260-17731629 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SH3GL2 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs16935871 | 0.89[EUR][1000 genomes] |
| rs3808705 | 0.83[ASN][1000 genomes] |
| rs55738147 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs57799581 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58331488 | 0.89[EUR][1000 genomes] |
| rs58433147 | 0.89[EUR][1000 genomes] |
| rs73645114 | 0.84[EUR][1000 genomes] |
| rs73645116 | 0.89[EUR][1000 genomes] |
| rs73645117 | 0.89[EUR][1000 genomes] |
| rs73645118 | 0.89[EUR][1000 genomes] |
| rs73645120 | 0.89[EUR][1000 genomes] |
| rs73645122 | 0.89[EUR][1000 genomes] |
| rs73645123 | 0.89[EUR][1000 genomes] |
| rs73645124 | 0.89[EUR][1000 genomes] |
| rs73645125 | 0.89[EUR][1000 genomes] |
| rs73645138 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73645140 | 0.89[EUR][1000 genomes] |
| rs73645141 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73645144 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs73645145 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv892675 | chr9:17694823-17790526 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv613706 | chr9:17718918-18090934 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv613707 | chr9:17720175-18070475 | Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv613708 | chr9:17720175-18072085 | Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
