Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1041290	0.95[ASN][1000 genomes]
rs10780955	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10780960	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10868817	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10868826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868851	0.83[AFR][1000 genomes]
rs11142391	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11142393	0.85[ASN][1000 genomes]
rs11142449	1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11142461	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11142468	0.84[AFR][1000 genomes]
rs11142499	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11142500	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11142616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12000789	0.83[AFR][1000 genomes]
rs12238439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12353500	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1353010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4744594	0.90[CEU][hapmap];0.96[EUR][1000 genomes]
rs59478866	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7019238	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7021955	1.00[JPT][hapmap]
rs72714318	0.98[ASN][1000 genomes]
rs7855134	1.00[JPT][hapmap]
rs7860270	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71045600-71061400	Weak transcription	NHLF	lung
2	chr9:71051200-71062000	Weak transcription	Left Ventricle	heart
3	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
4	chr9:71051600-71066600	Weak transcription	Right Ventricle	heart
5	chr9:71053000-71061400	Weak transcription	Fetal Heart	heart
6	chr9:71057800-71060000	Enhancers	Fetal Lung	lung
7	chr9:71058000-71062000	Enhancers	Colon Smooth Muscle	Colon
8	chr9:71058200-71059400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr9:71058200-71059600	Enhancers	Stomach Smooth Muscle	stomach
10	chr9:71058200-71063800	Enhancers	Fetal Stomach	stomach
11	chr9:71058200-71068000	Enhancers	Rectal Smooth Muscle	rectum

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