Variant report

Variant	rs7878508
Chromosome Location	chrX:74705262-74705263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1010616	0.93[CEU][hapmap];1.00[TSI][hapmap]
rs11796028	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs11796750	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs12832571	0.87[CHB][hapmap]
rs12839727	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs1936915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1936917	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs2012661	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs2124691	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2124693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2367174	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2886929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4892408	0.86[CEU][hapmap];0.87[CHB][hapmap];0.82[MEX][hapmap]
rs4892580	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs5937369	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs5937384	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs5938060	0.87[CHB][hapmap]
rs5938075	0.86[CEU][hapmap];0.87[CHB][hapmap];0.82[MEX][hapmap]
rs5938116	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs5981861	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs5981875	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs5981886	0.86[CEU][hapmap];0.87[CHB][hapmap];0.88[MEX][hapmap]
rs6607563	0.87[CHB][hapmap]
rs6647139	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs6647730	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647731	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6647753	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs7052314	0.81[CEU][hapmap];0.87[CHB][hapmap];0.82[MEX][hapmap]
rs9887743	0.81[CEU][hapmap];0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534539	chrX:74669627-75200415	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74693400-74706600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links