Variant report

Variant	rs7885952
Chromosome Location	chrX:74506413-74506414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1017681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs1017682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12008941	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12156864	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12861282	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs1318846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1353592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1874557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1936914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1936918	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs1936919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs1936923	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1998492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs1998493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs1998494	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs2146767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2209045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs2209046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs2209052	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs2224753	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs2224754	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs2367108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2367165	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2367177	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs2367178	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs3850144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4892404	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs4892579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4892583	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4892587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs4892588	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs5937370	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5938009	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5938014	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5938015	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5938047	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5938053	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs5938054	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs5938065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5938066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5938069	1.00[CHB][hapmap]
rs5938070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5938077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5938079	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5981343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5981358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs5981362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap]
rs5981831	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5981834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6647105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs6647123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs6647687	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6647741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6647747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7886499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534085	chrX:74360310-74516106	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv13841	chrX:74461978-74657064	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532360	chrX:74462926-74651249	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1067730	chrX:74463757-74592761	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv532879	chrX:74463757-74592761	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv916109	chrX:74463757-74651249	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74495200-74528800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chrX:74495800-74527800	Weak transcription	Thymus	Thymus
3	chrX:74496200-74514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chrX:74498800-74516400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chrX:74503200-74506800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chrX:74504600-74520600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chrX:74504600-74547600	Weak transcription	Brain Hippocampus Middle	brain
8	chrX:74505000-74523800	Weak transcription	Left Ventricle	heart
9	chrX:74505200-74532400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chrX:74505600-74515200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chrX:74505600-74516800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chrX:74505600-74517200	Weak transcription	Adipose Nuclei	Adipose
13	chrX:74505800-74506600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chrX:74506400-74506600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chrX:74506400-74515400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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