Variant report

Variant	rs7893773
Chromosome Location	chr10:52916173-52916174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10995918	0.95[ASN][1000 genomes]
rs1871630	0.98[ASN][1000 genomes]
rs1904676	0.96[ASN][1000 genomes]
rs1904677	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1904683	0.89[ASN][1000 genomes]
rs1904687	0.96[ASN][1000 genomes]
rs1904688	0.97[ASN][1000 genomes]
rs1904689	0.97[ASN][1000 genomes]
rs1904692	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904693	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904695	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1904696	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1904697	0.80[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1904698	0.83[ASN][1000 genomes]
rs1904699	0.82[GIH][hapmap];0.80[JPT][hapmap]
rs2339731	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2339732	0.98[ASN][1000 genomes]
rs3851088	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3862576	0.96[ASN][1000 genomes]
rs3862579	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3998228	0.96[ASN][1000 genomes]
rs4505006	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479991	0.96[ASN][1000 genomes]
rs7068022	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085697	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9414844	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9415733	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9633538	0.80[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7893773	PRKG1	cis	cerebellum	SCAN
rs7893773	PRKG1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52895200-52924000	Weak transcription	Fetal Stomach	stomach
2	chr10:52895600-52916600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:52898000-52919600	Weak transcription	NHLF	lung
4	chr10:52906000-52931200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:52907200-52916800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:52908000-52929600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:52908400-52916800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:52908400-52929600	Weak transcription	Aorta	Aorta
9	chr10:52910000-52931000	Weak transcription	Fetal Lung	lung
10	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:52913000-52922000	Weak transcription	Right Ventricle	heart
12	chr10:52913200-52921800	Weak transcription	Colon Smooth Muscle	Colon

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