Variant report

Variant	rs789497
Chromosome Location	chr6:150577823-150577824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150572423..150575831-chr6:150576136..150578517,3	MCF-7	breast:
2	chr6:150576059..150579717-chr6:150580532..150582490,4	K562	blood:
3	chr6:150571832..150575013-chr6:150575106..150579101,3	K562	blood:
4	chr6:150489261..150490775-chr6:150576809..150578342,2	K562	blood:
5	chr6:150576665..150578563-chr6:150593687..150595296,2	MCF-7	breast:
6	chr6:150572452..150574254-chr6:150575448..150578031,3	K562	blood:
7	chr6:150571087..150575708-chr6:150576058..150580847,8	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1086204	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1737285	1.00[AFR][1000 genomes]
rs17526796	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17527128	0.94[AMR][1000 genomes]
rs34163668	1.00[AFR][1000 genomes]
rs55645176	0.85[AMR][1000 genomes]
rs596851	1.00[AFR][1000 genomes]
rs608953	1.00[AFR][1000 genomes]
rs609421	1.00[AFR][1000 genomes]
rs617079	1.00[AFR][1000 genomes]
rs686410	1.00[AFR][1000 genomes]
rs789496	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150571000-150579200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:150571400-150579400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150574200-150578800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:150574800-150590800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150575600-150579000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:150576400-150579600	Weak transcription	K562	blood
7	chr6:150576400-150580400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:150576600-150578600	Weak transcription	Osteobl	bone
9	chr6:150576800-150579000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr6:150577000-150579000	Enhancers	Hela-S3	cervix
11	chr6:150577200-150578000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:150577200-150578200	Genic enhancers	Fetal Heart	heart
13	chr6:150577200-150578400	Enhancers	NH-A	brain
14	chr6:150577200-150579000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:150577400-150578600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:150577400-150579200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:150577400-150585200	Weak transcription	Right Ventricle	heart
18	chr6:150577400-150585400	Weak transcription	Left Ventricle	heart
19	chr6:150577400-150588200	Weak transcription	Psoas Muscle	Psoas
20	chr6:150577600-150578200	Weak transcription	Placenta	Placenta
21	chr6:150577600-150578200	Enhancers	GM12878-XiMat	blood
22	chr6:150577600-150578400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:150577600-150578600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:150577600-150579200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:150577600-150579400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:150577600-150580400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:150577800-150578200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:150577800-150578200	Enhancers	NHEK	skin
29	chr6:150577800-150580000	Enhancers	HMEC	breast

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