Variant report

Variant	rs7895250
Chromosome Location	chr10:52086621-52086622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:52084222..52086810-chr10:52173871..52176505,2	K562	blood:
2	chr10:52083101..52087112-chr10:52175005..52179754,6	K562	blood:
3	chr10:52084925..52086838-chr10:52120229..52123147,2	K562	blood:
4	chr10:52085312..52087982-chr10:52138618..52141238,2	K562	blood:
5	chr10:52038390..52041263-chr10:52085010..52087882,2	K562	blood:
6	chr10:52085739..52087419-chr10:52285865..52287749,2	K562	blood:
7	chr10:52050788..52053473-chr10:52085482..52088054,2	K562	blood:
8	chr10:52079847..52082788-chr10:52084797..52086833,2	MCF-7	breast:
9	chr10:52065089..52067181-chr10:52085442..52087556,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198964	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10825665	0.94[CEU][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10825729	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10825740	0.95[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11005193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12354429	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1865746	0.95[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs2217899	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2842096	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7070330	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs7078238	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7092981	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094121	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7894586	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518071	chr10:51595893-52157935	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1053903	chr10:51886486-52163991	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040661	chr10:51886486-52164585	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1051028	chr10:51886486-52164585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1037118	chr10:51886486-52167442	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	esv2830205	chr10:51978430-52135215	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv1053293	chr10:51981959-52102649	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv1046850	chr10:52009869-52135542	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv540625	chr10:52009869-52135542	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	esv2762864	chr10:52030945-52107415	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv521273	chr10:52051645-52197847	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52067400-52093600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:52071000-52102400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:52071000-52102600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:52071200-52091800	Weak transcription	Fetal Intestine Small	intestine
5	chr10:52071200-52093400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr10:52071200-52093800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:52071200-52094000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:52071200-52094200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:52071200-52095800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:52071200-52103000	Weak transcription	Fetal Intestine Large	intestine
11	chr10:52071200-52103200	Weak transcription	Thymus	Thymus
12	chr10:52071200-52103400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:52071200-52103400	Weak transcription	Esophagus	oesophagus
14	chr10:52073000-52094200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:52073000-52102800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:52074800-52091400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:52076400-52103200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:52077400-52087200	Weak transcription	Gastric	stomach
19	chr10:52080400-52087600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:52080600-52102600	Weak transcription	Lung	lung
21	chr10:52082000-52094200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:52082200-52086800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:52084000-52103200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:52084400-52086800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:52084400-52086800	Enhancers	Colon Smooth Muscle	Colon
26	chr10:52084400-52103400	Weak transcription	Spleen	Spleen
27	chr10:52084600-52087400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr10:52084600-52093400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:52084800-52086800	Enhancers	Stomach Mucosa	stomach
30	chr10:52085000-52087400	Enhancers	Fetal Heart	heart
31	chr10:52085000-52087600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr10:52085200-52087400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr10:52085200-52087400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:52085400-52086800	Enhancers	Fetal Lung	lung
35	chr10:52085400-52087200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:52085600-52086800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr10:52085800-52086800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr10:52085800-52086800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:52085800-52086800	Weak transcription	Primary T cells from cord blood	blood
40	chr10:52085800-52086800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:52085800-52086800	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:52085800-52086800	Active TSS	Right Atrium	heart
43	chr10:52085800-52086800	Genic enhancers	GM12878-XiMat	blood
44	chr10:52085800-52086800	Enhancers	HSMM	muscle
45	chr10:52085800-52086800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr10:52085800-52086800	Enhancers	NH-A	brain
47	chr10:52085800-52087200	Weak transcription	Fetal Thymus	thymus
48	chr10:52085800-52087400	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr10:52085800-52094200	Weak transcription	Primary B cells from cord blood	blood
50	chr10:52085800-52094800	Weak transcription	Liver	Liver

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