Variant report

Variant	rs7899869
Chromosome Location	chr10:50480164-50480165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50476174..50479892-chr10:50480036..50482768,4	K562	blood:
2	chr10:50478467..50480790-chr10:50505302..50507666,2	K562	blood:
3	chr10:50475395..50477674-chr10:50480122..50481734,2	K562	blood:

Variant related genes	Relation type
ENSG00000236208	Chromatin interaction
ENSG00000177354	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2377966	1.00[MEX][hapmap]
rs7077519	0.83[AFR][1000 genomes]
rs7081089	0.83[AFR][1000 genomes]
rs7091939	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303723	0.83[AFR][1000 genomes]
rs73305870	0.83[AFR][1000 genomes]
rs73305896	0.83[AFR][1000 genomes]
rs73305897	0.83[AFR][1000 genomes]
rs73305899	0.83[AFR][1000 genomes]
rs73305900	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50470800-50480800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50477800-50480400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:50478000-50480600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:50478200-50481800	Enhancers	Left Ventricle	heart
5	chr10:50478200-50482000	Enhancers	Fetal Heart	heart
6	chr10:50478200-50482200	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:50478200-50482400	Enhancers	Fetal Muscle Leg	muscle
8	chr10:50478400-50482000	Enhancers	Fetal Muscle Trunk	muscle
9	chr10:50478600-50481600	Enhancers	Psoas Muscle	Psoas
10	chr10:50478600-50481600	Enhancers	Right Ventricle	heart
11	chr10:50478600-50481600	Enhancers	Spleen	Spleen
12	chr10:50478600-50483200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:50478800-50481600	Enhancers	Right Atrium	heart
14	chr10:50478800-50482000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr10:50479000-50481800	Enhancers	NHDF-Ad	bronchial
16	chr10:50479000-50482000	Enhancers	HSMMtube	muscle
17	chr10:50479200-50480200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:50479200-50481600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:50479200-50483200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:50479400-50481000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:50479600-50480400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr10:50479600-50481200	Enhancers	NHLF	lung
23	chr10:50479800-50480600	Enhancers	Osteobl	bone
24	chr10:50479800-50481000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:50479800-50481600	Enhancers	Muscle Satellite Cultured Cells	--
26	chr10:50479800-50482000	Enhancers	Placenta	Placenta
27	chr10:50480000-50480200	Flanking Active TSS	HSMM	muscle
28	chr10:50480000-50480800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr10:50480000-50481000	Enhancers	K562	blood
30	chr10:50480000-50481600	Enhancers	Adipose Nuclei	Adipose
31	chr10:50480000-50482000	Enhancers	Primary B cells from peripheral blood	blood

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