Variant report

Variant	rs79012958
Chromosome Location	chr9:36508-36509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr9:36139-36621	H1-hESC	embryonic stem cell:	n/a	chr9:36191-36200
2	POLR2A	chr9:36184-36807	H1-hESC	embryonic stem cell:	n/a	n/a
3	POU2F2	chr9:36138-36758	GM12878	blood:	n/a	chr9:36521-36542 chr9:36521-36543 chr9:36515-36537
4	CEBPD	chr9:36082-36868	K562	blood:	n/a	n/a
5	STAT5A	chr9:36185-36643	K562	blood:	n/a	n/a
6	TEAD4	chr9:36187-36753	H1-hESC	embryonic stem cell:	n/a	chr9:36191-36200
7	ZBTB33	chr9:36466-36591	HepG2	liver:	n/a	n/a
8	POLR2A	chr9:36216-36728	GM12891	blood:	n/a	n/a
9	POLR2A	chr9:36106-36777	Hela-S3	cervix:	n/a	n/a
10	REST	chr9:36162-36831	H1-hESC	embryonic stem cell:	n/a	chr9:36743-36752
11	ZBTB33	chr9:35656-36809	K562	blood:	n/a	n/a
12	SPI1	chr9:36169-36742	K562	blood:	n/a	n/a
13	JUND	chr9:36182-36642	HepG2	liver:	n/a	chr9:36583-36592 chr9:36585-36592 chr9:36582-36593
14	TCF3	chr9:36283-36549	GM12878	blood:	n/a	n/a
15	STAT5A	chr9:36142-36679	K562	blood:	n/a	n/a
16	HEY1	chr9:35288-39469	K562	blood:	n/a	n/a
17	POLR2A	chr9:35716-36967	H1-hESC	embryonic stem cell:	n/a	n/a
18	ZBTB33	chr9:35626-36936	K562	blood:	n/a	n/a
19	POLR2A	chr9:36181-36656	GM12891	blood:	n/a	n/a
20	RXRA	chr9:36254-36591	HepG2	liver:	n/a	n/a
21	POLR2A	chr9:35321-39022	H1-hESC	embryonic stem cell:	n/a	n/a
22	HEY1	chr9:35610-37008	K562	blood:	n/a	n/a
23	FOSL2	chr9:36188-36536	HepG2	liver:	n/a	n/a
24	SIX5	chr9:36068-36909	K562	blood:	n/a	n/a
25	CBX3	chr9:36125-36663	K562	blood:	n/a	n/a
26	TRIM28	chr9:36055-36879	K562	blood:	n/a	n/a
27	TAF1	chr9:36140-36839	H1-hESC	embryonic stem cell:	n/a	n/a
28	PAX5	chr9:36179-36780	GM12878	blood:	n/a	n/a
29	HEY1	chr9:36257-36529	HepG2	liver:	n/a	n/a
30	FOSL2	chr9:36185-36746	HepG2	liver:	n/a	chr9:36583-36592 chr9:36585-36592 chr9:36582-36593
31	TAF1	chr9:35637-36811	H1-hESC	embryonic stem cell:	n/a	n/a
32	GATA2	chr9:33620-37011	K562	blood:	n/a	chr9:36660-36670 chr9:36639-36648 chr9:36582-36591
33	CEBPB	chr9:36130-36607	K562	blood:	n/a	n/a
34	NR2F2	chr9:36011-36908	K562	blood:	n/a	n/a
35	POLR2A	chr9:36170-36706	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr9:35717-36990	H1-hESC	embryonic stem cell:	n/a	n/a
37	SP1	chr9:36049-36776	K562	blood:	n/a	chr9:36063-36073 chr9:36062-36074 chr9:36064-36073
38	GABPA	chr9:36192-36569	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
FAM138C	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8400	chr9:10001-51412	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv891939	chr9:10001-129899	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	esv19929	chr9:10485-48531	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949672	chr9:13091-274606	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv3347609	chr9:28452-36550	Active TSS Weak transcription Enhancers	TF binding region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	esv3366630	chr9:28452-36550	Active TSS Enhancers Weak transcription	TF binding region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3353764	chr9:28452-37550	Active TSS Weak transcription Enhancers	TF binding region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
10	nsv482863	chr9:31933-129899	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv427835	chr9:31994-235675	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	esv2758174	chr9:31994-383816	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	esv2759654	chr9:31994-383816	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv968757	chr9:32355-47190	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv3449696	chr9:36352-42150	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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